Lnig019607.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001765.1:18792-20447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0013 0.094 14.4 3.9 1 23 19 41 19 41 0.98 2 15 6e-05 0.0043 18.6 0.1 2 23 47 68 46 68 0.96 3 15 0.062 4.4 9.1 2.2 1 23 74 97 74 97 0.93 4 15 0.0017 0.12 14.1 1.8 1 23 112 135 112 135 0.95 5 15 0.00055 0.039 15.6 1.4 1 23 171 193 171 193 0.98 6 15 1.7e-05 0.0012 20.3 0.0 1 23 199 222 199 222 0.97 7 15 2e-05 0.0014 20.1 0.3 2 23 230 252 229 252 0.92 8 15 0.44 31 6.4 0.2 1 23 262 285 262 285 0.82 9 15 4.3 3.1e+02 3.3 0.3 1 23 326 349 326 349 0.91 10 15 0.0081 0.58 11.9 2.3 1 23 363 388 363 388 0.96 11 15 0.0091 0.65 11.7 0.7 2 23 402 424 401 424 0.95 12 15 0.0053 0.38 12.5 0.3 1 23 438 460 438 460 0.95 13 15 4.7e-06 0.00034 22.1 0.6 3 23 468 488 467 488 0.99 14 15 3.7e-05 0.0027 19.2 5.3 2 23 495 516 495 516 0.98 15 15 2.3e-06 0.00017 23.0 0.3 1 23 522 545 522 545 0.98
Sequence Information
- Coding Sequence
- ATGTTGCTAGACCAATCCAAGCCAAGGCTCCAGGTCAAATGCAAAAAGAGCAAGTTCGTATGCTTGACATGTGGCCACTCGTATGTGCAGCGGCACAAGTTACTGAGTCACATCAAGAGCCATGCCGTGGAGGCTTCCGAGTGTCAAGTGTGCAATAAGATATTCAACAATGCAGCCATGTTGGAGACACATATGATTCAACACACCGGCGTTCATCCATACCAGTGTCAAATATGTCATACTCGATTTTTGTTCAAAGCTTTACTAGCGAAGCACAACAAACTGGAACACAAAGATGTGCCCAAGAAATCTGCTTTTAAGAAGAATTTGGTATTCGTTTGTGACATTTGTGAGATTTCATTCACCACAGACTTCAAATTAAGGGCTCACAAAAAGCACTTGCACACTAAGAAACGTGAAAAGATGGAATTGTGTTTTATATGTGGTAAATGGTACAAGCACGTTAAACTTCACATAAAAGCTTTCCACTCTTCATTGCATGTACGGAAATATACCTGCTCACTCTGTCCTCGTGCGTACTTCACGCCCACAGAACTGAAGTATCACCATATGGTCCACACTGGTGCGAGGAACTTTGTGTGTGAAGTGTGTGCGCGAGGGTTCCGCAGGAAAGCCGCGCTGCAGAGACACATCCTTGTGGTGCACGAGAAACACTCCCAGACCCTCTCGTGTGATATTTGCAAGCGCACTTTCAACCAGAAGATGAACCTCCTTCGTCACATTGCAGAGATCCACAACGGACAAGCGCGGAACGTGAAGAAGTACTCTTGCGCGGAATGTGGCCAGCGGTTCCTCTCCGAGACACTGCGATATGAACACATGATGCTGATCCATGCAGGCAGAGTGCCATATCGCTGCAGCTGCGGTGACACTTTCAACATTAAAGCTCCGTACATACAGCATCGTCTAGAACGTCATAGTATTAACATTGAACGTAGTCGACATCCAACTTCATACTCGTGTTATCTCTGTGATGAAAAGCCACATGACTTAAATTCTCTTGAAGCTCATTGGAAGGAAGTACATGGAAAGCCAATGGACAATTTTAATAGTGTCAAGGTGGTTTTTAAATGTAAAGATTTATCTTGTAATATGAGTTTTTCTTCAGCTTTAGACCTACGTATGCACAGAAGAGCATGTCACCGTAAAGCAGGATTAAATTCAACTCAAACTGAATCAAAATCCTGTGCTCATTGTGTGGCTACTTTTGCATCCAAACAAGCTCTATCTAAACATTTACTTAGTGTCCACAATGACAACACTTTGACGAGTTCTGAAAAGTCATACACATTTCCTTGCGAGACATGCGGCAGACTTTTCCGAGACGCTCGGAGCGTTCGAACTCACTCAACCATTCACACGGGCATTTTGAGTCACGGCTGCACCGTTTGCGGCAAAATGTTCCGTCAGAAGAGCGGCTTGAGCACGCATTTGATGTCGCACACGGACCTGAAGCCTGCTCAATGCCTCGTTTGCGGGAAACACTTCCGCAACAACGTACAGTTGCACACGCATCAGCGCACGCACACCGGAGAACGACCTTACGAGTGTGATGTGTGCGGTCGAGCCTTCTCACAGAGCGGTGGCAGAAACAAGCACATGCGTCGGATGCACAAAACTTTCTCAGATTCCTAA
- Protein Sequence
- MLLDQSKPRLQVKCKKSKFVCLTCGHSYVQRHKLLSHIKSHAVEASECQVCNKIFNNAAMLETHMIQHTGVHPYQCQICHTRFLFKALLAKHNKLEHKDVPKKSAFKKNLVFVCDICEISFTTDFKLRAHKKHLHTKKREKMELCFICGKWYKHVKLHIKAFHSSLHVRKYTCSLCPRAYFTPTELKYHHMVHTGARNFVCEVCARGFRRKAALQRHILVVHEKHSQTLSCDICKRTFNQKMNLLRHIAEIHNGQARNVKKYSCAECGQRFLSETLRYEHMMLIHAGRVPYRCSCGDTFNIKAPYIQHRLERHSINIERSRHPTSYSCYLCDEKPHDLNSLEAHWKEVHGKPMDNFNSVKVVFKCKDLSCNMSFSSALDLRMHRRACHRKAGLNSTQTESKSCAHCVATFASKQALSKHLLSVHNDNTLTSSEKSYTFPCETCGRLFRDARSVRTHSTIHTGILSHGCTVCGKMFRQKSGLSTHLMSHTDLKPAQCLVCGKHFRNNVQLHTHQRTHTGERPYECDVCGRAFSQSGGRNKHMRRMHKTFSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -