Basic Information

Insect
Leuctra nigra
Gene Symbol
-
Assembly
GCA_934046545.1
Location
CAKOHC010002594.1:103128-105221[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0041 0.29 12.8 2.9 3 23 192 212 190 212 0.97
2 18 0.0078 0.56 11.9 1.9 1 23 219 242 219 242 0.97
3 18 0.025 1.8 10.3 4.0 1 23 251 273 251 273 0.98
4 18 0.0094 0.67 11.7 1.8 1 23 279 301 279 301 0.98
5 18 2.2 1.6e+02 4.2 1.3 3 23 309 329 307 329 0.96
6 18 0.055 3.9 9.3 1.7 1 23 335 357 335 357 0.98
7 18 5.5e-05 0.0039 18.7 1.5 1 23 363 385 363 385 0.99
8 18 0.00011 0.0077 17.8 1.2 1 23 391 413 391 413 0.99
9 18 7.6e-05 0.0054 18.3 0.8 1 23 419 441 419 441 0.99
10 18 1.4e-06 0.0001 23.7 0.3 1 23 447 469 447 469 0.99
11 18 6e-05 0.0043 18.6 2.3 1 23 475 497 475 497 0.99
12 18 0.0002 0.015 16.9 0.7 1 23 503 525 503 525 0.99
13 18 1.4e-05 0.00098 20.6 0.5 1 23 531 554 531 554 0.97
14 18 0.34 25 6.8 2.8 1 23 560 582 560 582 0.98
15 18 4.5e-05 0.0032 19.0 3.8 1 23 590 612 590 612 0.99
16 18 5.9 4.2e+02 2.9 7.7 1 23 618 640 618 640 0.98
17 18 0.0077 0.55 12.0 2.2 1 23 646 668 646 668 0.99
18 18 0.0014 0.1 14.3 2.0 1 23 674 697 674 697 0.98

Sequence Information

Coding Sequence
ATGAGCCAACGCATGGATCCCAGTGTCATTGTAAAGTCTGAGCCGGAAGAAGCAGAAGATTCAACATTTATAAGCCTCGAAGATACGTTAACTACAGCAACATCCATCAAAACTTTAGAAGAGTACGAGATTGAACAGAAACCTCTGGCAGACAATCAAACCGATTTGGTTCACATCCATAATAGAGCTgcagaaaatacatttttaagtcACAGTGCTTATGTTTATAATGAACTCAGCGAAACAGGAGGATTAGAGTCTTTTTCAGGACTTCTCGAGCCAAAAGTAGAAATACCTGAAATTGACAGTGTAAATGAACTTTGGAGATGTAAATATCAGATACAAGAGTGTTTTGTGTCGCTCAGTAGAATAGAGTTAGATTTTCCAATATCTGGGAGCTTCCCGATTGCATCCAGTAGTGGATCCAGACACAGTGGCTGCAAGACTAACTCTGCTCAGAACACATCCAACGAGATCAAACTTGAACATATAGAGAAGAGCGATGTGGGCTTTGCAGAGATGAATAATCCGTCATTTAATCCTTTTGCACAATCAACAGATAGACCCTACGGATGTTCACACTGCCCTTCCAGGTTCAAGCAAAAGAACACGCTGATACAACATCTGTTCACACACCAAAAAGGGGAGAAAAAGTTTGTATGCGACACGTGCAATGCTGCCTTTACTCTACTCAGATATCTCAATGAGCATCAACAAAAATGCCACTCCTCGAAGTTATGGAAGATGAGGTATCATTGCTTCCAGTGCGACTACAGCGCACATTATAAATCTGAACTCGCCGTCCATCTTCGTAGGCATACCGGCGAGCGCCCGTATGCCTGCCGAGATTGCACTTTCAAGAGTGCAACAAGTAAAGGACTGTCACGACACAGGAGGCGACATTCCTCCGAGAAAAAGTACGGGTGTACGCAATGCGACTTCAGAACATACAATAAGATGAGCTTAACGTTTCATGAACGCATACATTCAGGTGAGCGGCCTTACGCGTGTGACCTTTGTACATACAAGGGCATAAACCAATGTGCATTGACCATGCACAAGCGGACTCATTCAGGGTTTAAACCCTTCAAATGCGGCGAGTGCGGGTACGCTTGCTCGACCAGCAACGCAATGACCGTACACAGACGTACGCACACGGGAGTCAAGCCATACAAGTGCGGGCAGTGCAGTTACGCTTGCGTCACCCGCAGCGCCTTGGCTATTCACATGAAGAGGCACACGGGCGAGAAGGCGTACAAGTGCGGTCaatgcagctacgccggcgccACTAGCACCAACCTCAAGACCCACATGAAAACGCACTCGGACCTCAAGGCGTACAAGTGCGACGTTTGCGACGCCGCTTTCAAGAACAACAGCAACTTGATCGGACACAAGCGGACACACTCCAGTGTAAAACCGTACAAGTGTGACGTGTGTTCTTACGCTTGCAACAGCAGCAGTGGCTTAAAGATACACCAGCGGAAGCACACGCAAGACAAGCCGTTTAAATGCGAACTTTGTAACTATTCCAGCAGCGGCAGCAGCGGCTTCATCATTCACATGAGGAAGCATACCGGAGTTAAGCCGTACAAGTGCGATGAATGCGACGCGGCTTACACCAACAGTAGCAACCTTATCGAACATAAGCAGCGGAAACACTCCGGAGTCAAGGCGTTTAAATGCGACAAGTGTCCGTACGAGAACCACAGGCGAGACCTTCTCGTCAAACACAAGCTGACACACGTGATGGTCGAGAAGCAGCCGTACAAGTGCGAGGAATGCGGTTACGTCTGCAAGACTCGGAAATACATGGTGAGTCACATGCGGCGACACTCGGATCACAAGCCGTACGCGTGCGACACGTGCAAGTTCAAGTGCAAGAGTCGCACCACCTTGGTCTGTCACATGAAGAGACACTCGGGCGAGAAGGCGTTCAAATGCGATCAGTGTACGTACGCCTGCATCAGCAGTGGCTCGATGATCTTGCATAAGAGGACGCACACCAATGAGAAGCCGTTTAAATGTGATGCGTGCGATTACGCGAGCACCAACCACGCCAACCTCGCCCGACATAAGAGAAAATACCACTAG
Protein Sequence
MSQRMDPSVIVKSEPEEAEDSTFISLEDTLTTATSIKTLEEYEIEQKPLADNQTDLVHIHNRAAENTFLSHSAYVYNELSETGGLESFSGLLEPKVEIPEIDSVNELWRCKYQIQECFVSLSRIELDFPISGSFPIASSSGSRHSGCKTNSAQNTSNEIKLEHIEKSDVGFAEMNNPSFNPFAQSTDRPYGCSHCPSRFKQKNTLIQHLFTHQKGEKKFVCDTCNAAFTLLRYLNEHQQKCHSSKLWKMRYHCFQCDYSAHYKSELAVHLRRHTGERPYACRDCTFKSATSKGLSRHRRRHSSEKKYGCTQCDFRTYNKMSLTFHERIHSGERPYACDLCTYKGINQCALTMHKRTHSGFKPFKCGECGYACSTSNAMTVHRRTHTGVKPYKCGQCSYACVTRSALAIHMKRHTGEKAYKCGQCSYAGATSTNLKTHMKTHSDLKAYKCDVCDAAFKNNSNLIGHKRTHSSVKPYKCDVCSYACNSSSGLKIHQRKHTQDKPFKCELCNYSSSGSSGFIIHMRKHTGVKPYKCDECDAAYTNSSNLIEHKQRKHSGVKAFKCDKCPYENHRRDLLVKHKLTHVMVEKQPYKCEECGYVCKTRKYMVSHMRRHSDHKPYACDTCKFKCKSRTTLVCHMKRHSGEKAFKCDQCTYACISSGSMILHKRTHTNEKPFKCDACDYASTNHANLARHKRKYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-