Lnig026687.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010002709.1:24317-26608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0036 0.25 13.0 0.1 3 19 33 49 32 50 0.96 2 13 4.4e-05 0.0031 19.0 0.3 1 23 61 83 61 83 0.97 3 13 2.6e-05 0.0019 19.7 2.9 1 23 90 112 90 112 0.97 4 13 5e-06 0.00036 22.0 0.8 1 23 158 180 158 180 0.98 5 13 0.0016 0.11 14.1 0.5 1 21 189 209 189 210 0.95 6 13 0.001 0.071 14.8 4.8 1 20 235 254 235 261 0.94 7 13 0.0032 0.23 13.1 0.1 1 23 262 285 262 285 0.98 8 13 4.7e-05 0.0034 18.9 0.2 1 23 291 313 291 313 0.98 9 13 0.00012 0.0084 17.7 2.8 3 23 323 343 321 343 0.99 10 13 0.045 3.2 9.6 0.6 3 23 351 371 349 371 0.96 11 13 0.0012 0.088 14.5 0.3 1 23 377 400 377 400 0.96 12 13 0.019 1.4 10.7 1.0 1 23 415 437 415 437 0.95 13 13 0.00015 0.011 17.4 0.2 1 23 524 546 524 546 0.96
Sequence Information
- Coding Sequence
- ATGGCAGTTGAAGCTCTAAGTCAACTGGGAGGAATGTTCAACATGAGTGATGTCCATGAACTAACAGACACAGAATTTGCTGATTTGTCACCTCTGTGTGAAACGTGCGGCATGCAGTTCCGATCAGCATACGAGTTGCAAAACCATACACCAGTGTGCCAGGCTCTGTCAACTGAAGTTCATGTTTGCAATGTGTGCGGAGAGAACTTTGAAAGGAAAATTGATCTCAGCAATCACATCGCTTCTCACCAACCTGCTGAAAAACTACATACTTGTCGTATTTGCTCCAGTGTCTTCTCTCGGAAATCAGATCTCACTAATCACATGTCGAGCCATCAAACCATCCGGCCGCATCAGTGCCCAGAGTTAAAAGTAGAAGCAGTCCCATTCTTCTTGCCTGGAGAAAACGATAATGCCGAGAATATATACTCCATTGATAAACTCTCCGAGAAGGCTGCATTCACGGGCTCTCACCAGTGCAATGAGTGTGGTGTTACATTCACTCGTCTGAAGGCATTGCAGGCTCACGTACTGAAGCATGCAGACATCTGGGCCCAGAGGCCATTCGAATGTCACAGGTGTTCAGAGCCATTTAATGATTCCGATGGACTTAAACTTCATTTACAATTCTGCACCTTTGGTGGAAATGCGCCAATACCCTCAAATGTAGAAAGTCGAGCAGTACAAGCTAAATCTGGAAAACACCCCTGTAGTAGCTGTGATAAAAGATTTACGACAAAGCAGAAGCTTTTTCGGCACATGTGGATTCATCGAAAGAAGCACTATGTGTGTGAAGTGTGTTCTTTAAGTTTGAATACTCAAGAAGCTTTAGACAGTCATCGCCGTTCCGTGCATCCCGGTGACCCTCCCTTCGTCTGCCAGACATGCGGCAAGAGTTTCGCGAGCCGCCAGGGCGTGTGGGAACACCGACGTGTACATGGCACTAACAAGGTCAGTCTCTTCTGGTGTCACGAGTGCAACAAGAGCTTCTCGAGTCGTCAGGGCTATCTCATTCACACGAGAACACACACCGGTGAACGCCCGTACGGTTGCCGCTTCTGCATGAAAGCGTTCCGAGACGGCGGAACTCTGCGGAAACATGAACGCATTCACACGGGAGAACGGCCCCATGTTTGCCCGCTGTGTTATCGAGCGTTCAATCAGAAGGTAGTGTTGCGCGAGCATGTTCGCTGGGTACACGCTGCCAACCGATCCGGTGTGGACAATGATAAGGAGCATGTGTATCTCTGTCAAGTTTGTGATCACACACTTGGGGATAGAGAAGAACTCTGTGCTCACATTGTGAAACATAGCGATGACCTTGCAAAAGCTGCTAAAAAGAAAGAACATCCAGTAGCCCCACAAGTAAATAGTTCATCATTGATAAAAAGAAATCTTGTTAATAATAAAGTGAActtaaaaaagaaaaagaagaagaaaataacacCTGACTCATCGACAATAGATGATCCTTTATTAATATTAGACGAATCACATAGGACTACAAAAAATCACACCAAGCATCTCAGTTATCAATTAGAAGTCGCTGCTACAGAAATAAAGAAGGAGCATATTTGTGGAATGTGTGATGAAACTTTCATTGATAAGGTACAACTCATGGATCATGTACAGATACACATCTAG
- Protein Sequence
- MAVEALSQLGGMFNMSDVHELTDTEFADLSPLCETCGMQFRSAYELQNHTPVCQALSTEVHVCNVCGENFERKIDLSNHIASHQPAEKLHTCRICSSVFSRKSDLTNHMSSHQTIRPHQCPELKVEAVPFFLPGENDNAENIYSIDKLSEKAAFTGSHQCNECGVTFTRLKALQAHVLKHADIWAQRPFECHRCSEPFNDSDGLKLHLQFCTFGGNAPIPSNVESRAVQAKSGKHPCSSCDKRFTTKQKLFRHMWIHRKKHYVCEVCSLSLNTQEALDSHRRSVHPGDPPFVCQTCGKSFASRQGVWEHRRVHGTNKVSLFWCHECNKSFSSRQGYLIHTRTHTGERPYGCRFCMKAFRDGGTLRKHERIHTGERPHVCPLCYRAFNQKVVLREHVRWVHAANRSGVDNDKEHVYLCQVCDHTLGDREELCAHIVKHSDDLAKAAKKKEHPVAPQVNSSSLIKRNLVNNKVNLKKKKKKKITPDSSTIDDPLLILDESHRTTKNHTKHLSYQLEVAATEIKKEHICGMCDETFIDKVQLMDHVQIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -