Lnig013895.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- V-UBI
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001156.1:233850-241563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0046 0.33 12.7 0.2 1 23 454 476 454 476 0.95 2 14 0.013 0.9 11.3 1.2 1 23 509 533 509 533 0.97 3 14 2e-05 0.0014 20.1 0.1 2 23 540 562 539 562 0.96 4 14 0.0074 0.53 12.0 2.6 1 23 568 590 568 590 0.97 5 14 0.00086 0.061 15.0 0.2 1 23 596 618 596 618 0.98 6 14 4e-06 0.00028 22.3 2.8 1 23 624 646 624 646 0.98 7 14 1.9 1.3e+02 4.5 0.1 3 23 658 680 657 680 0.94 8 14 1.2e-06 8.3e-05 24.0 0.8 1 23 695 717 695 717 0.99 9 14 3.1e-05 0.0022 19.5 2.2 1 23 723 745 723 745 0.98 10 14 7.3e-06 0.00052 21.5 0.9 1 23 751 773 751 773 0.98 11 14 0.26 18 7.2 0.7 1 23 779 801 779 801 0.95 12 14 0.00092 0.066 14.9 2.9 1 20 807 826 807 829 0.94 13 14 2.1e-07 1.5e-05 26.3 0.2 1 23 835 857 835 857 0.98 14 14 1.9e-05 0.0013 20.2 1.1 1 23 863 885 863 885 0.97
Sequence Information
- Coding Sequence
- ATGAAATTAGTCTTGCGCAACGTCACAGGAGAAACAATCACCCTTGAGGTTAATCAAGGAGATACATTTCGAGATTTGAAGGCAAGAATTTTTGAGCAGTCAGGTATTCAACTGGATCTTGAGCAGCTTAATTATAAGGGGAAGAAGATTACTGATGATCAGATTATcaccaaatatttttttgaagGCGGACCTAAGAAGAATCCCTTAGATCATAAACGAGATGAAGTGACGTTGCAAGAAGAAGCAGTTATTCCGACAATCGAAGAATGCAGCGTACCAGGTTGCAACAATTCTGTTTCATTGTGTCCTGGtaaaactttcttcaactttcCAGCAGAAAATGATCGATGTCAGCACTGGCTCTTAGTTAGCAAGAGGCTAGATCTTCTTGACAAGGCGAGTTCTTATGTGAGTCAGTTTCACGCAATTTGCCAAGATCACTTCGATGTTGATCAGTTTGTTGACGACTTGAGATTACACTTGAAGCCAGGCGCCATCCCGACAATAATTGATGTTGATTATCTTGGTGACGAAGGTGATCAGATTATTGCAGATGGCATTGCAGGTGTACGAGGTCGATCTGTCAAAGAAGAACCATTATACTATGAGTCTGACAGCGAAGACATCGACTTGGTGTCCGATGCGGAAGATGACATTATGGATGATGCAGAATCTTCTGGGCTGCTCTGTCGCTTGTGTGCCACCAGTATTAGTGATACTGTTGTGTTCATCTACAGCCAGGCCGGTCAAGAGCTGAATGTAGCTCAGAAAATAAACATGGCTTTGCCTGTTGCGATTCGAAGTGCTGACCCTCTGCCAAAACAGCTTTGCATGACCTGCTTGGATAAGCTCAATATGTTTCACGAATTCTCGGAGACTTGTGTTCTTGCAGAACGAAAGCTTCGTCGCCTCAACCGCAAAAGGGTTTTCAAGTCAGGATTAGGACCTCCCATCAATGATGTGGAAACTATTGTGCCAGATAGAGTAAAAGAATCGAAGATTGATATTGAAGACAAGGAAGATGAGAAATTGGTTGAAGGGGTTAAGGAAAGTGTTGATGTTTATTGTTGCCCTCTGTGTCGTCTGGGTGACATGGCTATCCACGATTCATGTGACCCGCAAAACATGAGAGATGAAGTAAGGAAAATGGATGGCTTTCCTGGCCTTCTCCATGGTGAAGAAAGTGAGGAGAGTTCATATGAAGACATTGATAATGAAGATAATATGCTGGGTCTTGGAACAGATTCAAGTCTCACAAATCCTGAAGTAAACCGAACATGTCGATTCTGCATGGAAATATATGACACAGTTGAAATGTGCTTGACACATGGTAAAAGTCATGCCGAAAATGCCGAATATCCTTGCAACCTCTGTGATCTGTCATTCACCACTGAAATTGCCTTTGAAATGCACTGGACCTACCATAAAGTCTTAGAGATGAAGATAACATGTCGAACCTGTGGGAAActtatcaataagaaaaatatgCATGAGCATGTTTGCAGCAGCACCTTGAAAGCATTCAAGTGCACCGTTAGCCAATGTGGTAAATTTTTCCGCTCAGAAGAACGACTCGCCTTTCATCAGCGAGTTCACGAAGGTGCAAATCCTGTCGTGTGCGGCTACTGCAGCAAGTCATTCAGTCGCGAAGCAAACCTCTACGATCACGTTCGAATGGTTCACAAGGGGGAGAAACCTTTCTGTTGCACCACATGTGGAAAAACATTCCAGCTGAAAGCTCGCCTCTTGGCCCACAACCGCGTTCATACTGGTGAACGTCCATTCGAATGTGAAATCTGTGGTGGCCGTTTCTACAACAATGCCACACTGAAAGGTCATCGAGTAACACATATGGAGATGAAACCTTTTCAGTGTGATAAGTGTGGGCGATGCTTTGCAAGAAAGGCTTTGTTCAATCAACACCAAATGGTGCACATGAGTGAAACCATTCCTAAACAACAGAGAGCATGCAAGATTTGTGGAGGGATTGTGTTTGGCTCTTATGCCAAGCTTTTAGAGCATCGCAAGCTCAACCATCCAGGTGCCCCAGTGAAAGAAGAAAGTCCGTCATCAAAACCATTCAAGTGTGAAGAGTGCGGCAAGTCATTTGCTTATCGTGTAACGCTGGTTACACATTTACGCAAGCACTCTGGCGAGTTACCATTTGAATGTCAGTTCTGTGAGAAACGATTCTCACAAAAGCGTTCGCTCATACTGCATGAGCGTACTCACACGGGGGAAAAACCTTTTGAGTGTGATGTTTGTGGCAAGCGGTTTGCACAGAGCGCTCACATGTACTCGCACATTCGTCTGCACACCGGCGAGAAGCCCTACTCATGCGAGTTCTGCAATGCCACTTTTCGACTGAAAGACGTGAAGGATGCTCACGTTCGGAAGCATACTGGAGAGCGTCCATACCGATGTGAAGTATGTGAAAAGAAGTTCAGGACGTCACACTCATACTACCAGCACATGTGGATCCATCAGGGCAAGAAACCGTATCCATGTGGATACTGCGGAAAAGCTTTCAGGCGTTCTAATGGTCTAAAGATACACATCCGCATTCACACGGGTGAAAAACCGCACGTGTGTCCTGTGTGCAATCGAGGCTTCGCTCAGAAACAAGACATGAAGAAGCACATGAACTTGCACCTCAGTGGCAAGCTCTAG
- Protein Sequence
- MKLVLRNVTGETITLEVNQGDTFRDLKARIFEQSGIQLDLEQLNYKGKKITDDQIITKYFFEGGPKKNPLDHKRDEVTLQEEAVIPTIEECSVPGCNNSVSLCPGKTFFNFPAENDRCQHWLLVSKRLDLLDKASSYVSQFHAICQDHFDVDQFVDDLRLHLKPGAIPTIIDVDYLGDEGDQIIADGIAGVRGRSVKEEPLYYESDSEDIDLVSDAEDDIMDDAESSGLLCRLCATSISDTVVFIYSQAGQELNVAQKINMALPVAIRSADPLPKQLCMTCLDKLNMFHEFSETCVLAERKLRRLNRKRVFKSGLGPPINDVETIVPDRVKESKIDIEDKEDEKLVEGVKESVDVYCCPLCRLGDMAIHDSCDPQNMRDEVRKMDGFPGLLHGEESEESSYEDIDNEDNMLGLGTDSSLTNPEVNRTCRFCMEIYDTVEMCLTHGKSHAENAEYPCNLCDLSFTTEIAFEMHWTYHKVLEMKITCRTCGKLINKKNMHEHVCSSTLKAFKCTVSQCGKFFRSEERLAFHQRVHEGANPVVCGYCSKSFSREANLYDHVRMVHKGEKPFCCTTCGKTFQLKARLLAHNRVHTGERPFECEICGGRFYNNATLKGHRVTHMEMKPFQCDKCGRCFARKALFNQHQMVHMSETIPKQQRACKICGGIVFGSYAKLLEHRKLNHPGAPVKEESPSSKPFKCEECGKSFAYRVTLVTHLRKHSGELPFECQFCEKRFSQKRSLILHERTHTGEKPFECDVCGKRFAQSAHMYSHIRLHTGEKPYSCEFCNATFRLKDVKDAHVRKHTGERPYRCEVCEKKFRTSHSYYQHMWIHQGKKPYPCGYCGKAFRRSNGLKIHIRIHTGEKPHVCPVCNRGFAQKQDMKKHMNLHLSGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -