Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000119.1:125662-147109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.3e-05 0.0059 18.2 1.4 1 23 416 439 416 439 0.94

2 14 0.00037 0.026 16.1 0.5 1 23 446 468 446 468 0.97

3 14 4.3e-06 0.0003 22.2 0.3 1 23 472 494 472 494 0.98

4 14 3e-06 0.00021 22.7 0.8 1 23 500 522 500 522 0.98

5 14 3.6e-05 0.0026 19.3 0.9 1 23 526 548 526 548 0.96

6 14 0.023 1.6 10.5 2.4 1 23 554 576 554 576 0.97

7 14 0.092 6.6 8.6 5.6 1 23 584 606 584 606 0.98

8 14 5.7e-05 0.0041 18.7 0.5 1 23 611 633 611 633 0.96

9 14 4.9e-05 0.0035 18.9 2.2 1 23 637 659 637 659 0.98

10 14 9.8e-05 0.007 17.9 0.8 1 23 665 687 665 687 0.99

11 14 5.6e-06 0.0004 21.8 0.8 1 23 691 713 691 713 0.98

12 14 0.0031 0.22 13.2 2.2 1 23 719 741 719 741 0.98

13 14 0.011 0.81 11.4 6.2 1 23 745 767 745 767 0.98

14 14 0.081 5.8 8.7 0.2 1 23 773 797 773 797 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.3e-05	0.0059	18.2	1.4	1	23	416	439	416	439	0.94
2	14	0.00037	0.026	16.1	0.5	1	23	446	468	446	468	0.97
3	14	4.3e-06	0.0003	22.2	0.3	1	23	472	494	472	494	0.98
4	14	3e-06	0.00021	22.7	0.8	1	23	500	522	500	522	0.98
5	14	3.6e-05	0.0026	19.3	0.9	1	23	526	548	526	548	0.96
6	14	0.023	1.6	10.5	2.4	1	23	554	576	554	576	0.97
7	14	0.092	6.6	8.6	5.6	1	23	584	606	584	606	0.98
8	14	5.7e-05	0.0041	18.7	0.5	1	23	611	633	611	633	0.96
9	14	4.9e-05	0.0035	18.9	2.2	1	23	637	659	637	659	0.98
10	14	9.8e-05	0.007	17.9	0.8	1	23	665	687	665	687	0.99
11	14	5.6e-06	0.0004	21.8	0.8	1	23	691	713	691	713	0.98
12	14	0.0031	0.22	13.2	2.2	1	23	719	741	719	741	0.98
13	14	0.011	0.81	11.4	6.2	1	23	745	767	745	767	0.98
14	14	0.081	5.8	8.7	0.2	1	23	773	797	773	797	0.96

Sequence Information

Coding Sequence: ATGGCCGATACTTCGAAGAACTCATCTGTTAAAGTACGCTTTGTCATCGGAGAATCGTTCGGAAGCCAAGATGCCTGCTCCCCTGACGTGAAACAATGTTGCAGTAAATGCGTAGAGTTAGGTTACGAATCGAAGTGGATCAACGAGAAGGACTGTTTGATGTTAAAGCCGACGAATGAAGAGATCTTTGTCATTGAAAGATTTCAAGGCAAGACTTTCGAGCATCTCAGCCTCTTCAAATGTGTCATCATGAGTCCTCGTGCGCTCAACGAGGCCCTGAACAGTCGCACAGTCACTCTGCCCGAGCCCGGCACTCAGGTGTTCTCCGTCGCCATGCGCGACTGCATCATCTCCATCGGGAACTTCCCTGCTGAGCACAAGGCCCTGAACAGTCGCACAGTCACTCTGCCCGAGCCCGGCACTCAGGTGTTCTCCGTCGCCATGCGCGACTGCATCATCTCCATCGGGAACTTCCCTGCCGAGCACAAGTCACTCTGCCCGAGCCCGGCACTCCGTCGCCATGCGCGACTGCATCATCTCCATCGGGAACTTCCCTGCCGAGCACAAGATGAGTCACTCGCACTCAACGAGGCCCTGAACAGTCGCACAGTCACTCTGCCCGAGCCCGGCACTCCGTCGCCATGCGCGACTGCATCATCTCCATCGGGAACTTCCCTGCCGAGCACAAGTCGCACAGTCACTCTGCCCGAGCCCGGCACTCAGGTGTTCTCCGTCGCCATGCGCGACTGCATCATCTCCATCGGGAACTTCCTTGCCGAGCACAAGGCCCTGAACAGTCGCACAGTCACTCAGGTGTTCTCCGTTGCCATGCGCGACTGCATCATCTCCATCGGGAACTTCCCTGCCGAGCACAAGGAGCATCTGAGGAAGCTGGTGGGCTACATGAGCGGCAACTTCGCTGGTCGAAGTATGACGATGATGACGCATATTGTCGTCAACAACAGGATCTCCGCGTCCAAGTACCAGAAAGCTGAGCAGCACGGCGTCCTCGTGATGAACAAGGACTGGATCGAGGAGGTGTGGCGCACGTGTCAGCGTTCCTCGACGGTGTTGGCGACGGAAGAGCGCTTCTCGCATCTCATGTTCATGCCGCCGGGCTACAGCGCGGGCAGGAGGGTCAAGTCGGAGCCCGTAGAGGTCCCAGAGGTCGACAAGCCAGAATGGGTGGTCGTGCACGGAGACGAACTGGCTCCGAGCTGcgacgaggaagaggaggagccCAAGTTCGAGTGCGACGTCTGCAAGAAGCACTTCGCCTCCAAGAACTACCTCAAGGTCCATATCATCGAGACTCACGCCACGGCCAGCGCAAAACATCAGTGTGGGCTGTGTGGGAAGTCGCTGTCCACGGCTGCGCGACTGCAGTACCACCTGCGCGCGCACAGCAAGTCGTACAGCTGCAACGTCTGCGGCAAGACGTTCGCCTACAGCAACCTCCTGCGCGAGCATCTGCTCATCCACTCCGGTGCCGACCGGCACAAGTGCCCGGTGTGCAGTCGGTCGTACGCGAACCCCGGCGACCTCCGCCAGCACCTGAAGACCCACGTCATCTCGTACAACTGCGACGTCTGCGACCAGACCTTCGTCTACAAGAACTCTCTGAAGAAACACCTGGAGCTGCACTCCGGCAAGAAGAACTTCGTGTGCGACGTCTGCAAGAAGTCCTACACGTGCATCAGCGGCCTCAAGAAGCACAAACTCATCCACGACCCGACCTCCAAGACCACCCACAAGTGCTACGTCTGCAAGGAGTCGTTCCAGTTCAAGGACCAGCTCAAGTTCCATCTCAAGACGCACCAGAAGCGCGAGTTCAAGTGTGACGTGTGTCCCAAGACGTACATGAGCGCGAGCACGCTGCGCAAGCACAAGATCGCGCACGCGAGCCCGCACAAGTGCGACCAGTGCGAGAAGACGTTCGCGTTCAAGGACAGTCTGGTGACGCACCTCAAGGTCCACGCCAACGGCATGTCGTTCAAGTGCGACGTGTGCGGCAAGGCGTACGGCGCGGAGACGCACTTGAGACAGCACCAGAAGATTCACACCGACATGTACACGTGCGATTACTGCGACAAGGTGTTCAGCATCAAGAACTCGCTGCGGGAGCACATCAGCTCGCACCTCGCCATCAGGAGGCACAAGTGCTCGGTGTGCGGGCGCGACTACGTGAACGGCCGGAAGCTGCGCCAGCACGAGAAGACGCACCGCGAGTCCTTCAAGTGCTTCTTCTGCGACAAGACGTGCTCGCGCTTCCCCACGCTCAAGGTGCACTTCCAGACGCACTCGGGACTGAAGAACTTCAAGTGCGCGCTGTGCAAGGACCGCGCGTACACGACGGCGCGCGGACTCAAGCTGCACATGGCCTCGGTGCATGGCGAGGTCAAGGCCGAGCCGGGTGTCGCGGCCAAGAAGTGA
Protein Sequence: MADTSKNSSVKVRFVIGESFGSQDACSPDVKQCCSKCVELGYESKWINEKDCLMLKPTNEEIFVIERFQGKTFEHLSLFKCVIMSPRALNEALNSRTVTLPEPGTQVFSVAMRDCIISIGNFPAEHKALNSRTVTLPEPGTQVFSVAMRDCIISIGNFPAEHKSLCPSPALRRHARLHHLHRELPCRAQDESLALNEALNSRTVTLPEPGTPSPCATASSPSGTSLPSTSRTVTLPEPGTQVFSVAMRDCIISIGNFLAEHKALNSRTVTQVFSVAMRDCIISIGNFPAEHKEHLRKLVGYMSGNFAGRSMTMMTHIVVNNRISASKYQKAEQHGVLVMNKDWIEEVWRTCQRSSTVLATEERFSHLMFMPPGYSAGRRVKSEPVEVPEVDKPEWVVVHGDELAPSCDEEEEEPKFECDVCKKHFASKNYLKVHIIETHATASAKHQCGLCGKSLSTAARLQYHLRAHSKSYSCNVCGKTFAYSNLLREHLLIHSGADRHKCPVCSRSYANPGDLRQHLKTHVISYNCDVCDQTFVYKNSLKKHLELHSGKKNFVCDVCKKSYTCISGLKKHKLIHDPTSKTTHKCYVCKESFQFKDQLKFHLKTHQKREFKCDVCPKTYMSASTLRKHKIAHASPHKCDQCEKTFAFKDSLVTHLKVHANGMSFKCDVCGKAYGAETHLRQHQKIHTDMYTCDYCDKVFSIKNSLREHISSHLAIRRHKCSVCGRDYVNGRKLRQHEKTHRESFKCFFCDKTCSRFPTLKVHFQTHSGLKNFKCALCKDRAYTTARGLKLHMASVHGEVKAEPGVAAKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -