Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010001765.1:21241-22773[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.1e-05 0.0022 19.5 0.6 1 23 13 35 13 35 0.98

2 17 3.5e-05 0.0025 19.4 0.2 2 23 41 62 40 62 0.97

3 17 5.6e-06 0.0004 21.8 0.2 1 23 68 91 68 91 0.97

4 17 0.012 0.88 11.3 0.6 1 23 98 121 98 121 0.92

5 17 0.28 20 7.1 2.0 3 23 130 148 129 148 0.88

6 17 7e-05 0.005 18.4 2.4 1 23 156 178 156 178 0.96

7 17 1.6e-05 0.0012 20.4 0.4 1 23 184 206 184 206 0.98

8 17 0.0056 0.4 12.4 0.3 1 23 212 235 212 235 0.93

9 17 0.052 3.7 9.3 0.4 1 23 245 267 245 267 0.97

10 17 0.0091 0.65 11.7 2.9 5 23 276 295 273 295 0.94

11 17 0.34 24 6.8 5.3 1 21 305 325 305 326 0.94

12 17 6.8 4.8e+02 2.7 0.9 2 23 335 357 334 357 0.91

13 17 0.0013 0.091 14.4 0.7 1 23 363 388 363 388 0.92

14 17 0.0022 0.16 13.6 0.5 1 23 399 421 399 421 0.97

15 17 0.00013 0.0092 17.6 4.1 1 23 427 449 427 449 0.97

16 17 0.00015 0.011 17.3 0.5 2 23 456 477 456 477 0.97

17 17 0.0018 0.13 13.9 1.5 1 23 483 506 483 506 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.1e-05	0.0022	19.5	0.6	1	23	13	35	13	35	0.98
2	17	3.5e-05	0.0025	19.4	0.2	2	23	41	62	40	62	0.97
3	17	5.6e-06	0.0004	21.8	0.2	1	23	68	91	68	91	0.97
4	17	0.012	0.88	11.3	0.6	1	23	98	121	98	121	0.92
5	17	0.28	20	7.1	2.0	3	23	130	148	129	148	0.88
6	17	7e-05	0.005	18.4	2.4	1	23	156	178	156	178	0.96
7	17	1.6e-05	0.0012	20.4	0.4	1	23	184	206	184	206	0.98
8	17	0.0056	0.4	12.4	0.3	1	23	212	235	212	235	0.93
9	17	0.052	3.7	9.3	0.4	1	23	245	267	245	267	0.97
10	17	0.0091	0.65	11.7	2.9	5	23	276	295	273	295	0.94
11	17	0.34	24	6.8	5.3	1	21	305	325	305	326	0.94
12	17	6.8	4.8e+02	2.7	0.9	2	23	335	357	334	357	0.91
13	17	0.0013	0.091	14.4	0.7	1	23	363	388	363	388	0.92
14	17	0.0022	0.16	13.6	0.5	1	23	399	421	399	421	0.97
15	17	0.00013	0.0092	17.6	4.1	1	23	427	449	427	449	0.97
16	17	0.00015	0.011	17.3	0.5	2	23	456	477	456	477	0.97
17	17	0.0018	0.13	13.9	1.5	1	23	483	506	483	506	0.94

Sequence Information

Coding Sequence: ATGTCAAGCCTCCGGGAAACAGCCAGACGGAGCAAGTTCGTATGCTTGACATGTGGCCGCTCGTATGTGCAGCGAGACAAGTTACTGAGTCACATCAAGAGCCATGCCATGGAGGCTTCCAAGTGTCAAGTGTGCAATAAGATATTCAACAATGCAGCCATGTTGGAGACACATATGATTCAACACACCGGCGTTCATCCATACCAGTGTCAAATATGTGACACGGGATTTATATTCAAGGCTCTGTTGATTAAGCACATGAGACTGGAACATGGCCAAAGACCTAAAGATTACTCCTGCAATGTTTGTGCCACAGAGTACACGTCTCAAAATCGACTAAATCGACATTACGCTGCAAAGCACTCAGGTCCCGGCGAGCTGTCGCTGTGTTCTGTGTGCGGAAAGTCATACAAACATGTCCAACTACACATGAGAATGCAACATAATACAAAACGCATCAAGAAACATATCTGTCACATATGCTCTCAAGCTTTCTATCAACCCTACACTCTCAAAGCTCACTTATTGCGTCACTCCGGAACCAAAGACTACATTTGCGACGTGTGCGGTCGTTCCTACTACGAGAAACGCTCTCTGATTCGGCACTTGGAGACTCACACCGACGCTCTACCATATGCTTGTAGTTTGTGCCCGAAGGCATACAAGGTGAAGGAAGGTTTGAGCCAACACTTCAGCATAAAACACAATGGCAGAGTGAAGAAGATCACGCTGTACCCCTGCGAGCTGTGTGGAAAGCAGCTTCGCTCTCTCCTCATGAAGAATGACCACATGAGCAAGCATGCGGGTAAACCGCAACATCGGTGCAACTGCGGTCGTAGCTTCTACACTAACAAGGGTTTAACGATGCACCAACAGAGGGAGCATGCCGATGTCAGCCAGCAGATGGAAGAGCACGTCTGTGAAAAGTGTACCAAACAATTCCATTGCGCCAGCGACTTGCGGCGCCACACCAAGTCTTGCGGCACAGCACACCAAGCCATATCGTGTAGAGAATGTAGCGATTCATTCCTCAGCTACAATATGTTGCGACAGCACACCCGTGATCAGCACGGCCACATATTGACTTTCCCATGCAGTGAGACGGGCTGTGAGAAGAGCTACGGATCAAGCAGTGGACTGAGACAACATATGCATTTCATACACGGCACTGGGTCTAAGCCGGCACCAAAGATTTTTGCGTGTCAGTTGTGCGACAGGATCTTCGGCCAGAAGTTCTTTCTAGACAATCACATGACCATCCACACTGGGGAGAAAAAACACGTCTGCTCCACCTGTGGCAAGAGTTTCCGCCTGCAGTCGTGTCTGCGAGACCACACGCTGATACACACAGTAGAGAAGACGGCTGTCTGCTCTGTCTGCAGCAAGGGGTTCAGACTTAAGCGACAGCTGGATGTACACATGCGGATTCATACCGGTGTTAAACCTTATGCCTGCGACGTCTGTCACAGGAGATTTGCACAGAGTGGCGATCGCAACAAACATCGCATCAACACTCACAAGAACATCACCTGA
Protein Sequence: MSSLRETARRSKFVCLTCGRSYVQRDKLLSHIKSHAMEASKCQVCNKIFNNAAMLETHMIQHTGVHPYQCQICDTGFIFKALLIKHMRLEHGQRPKDYSCNVCATEYTSQNRLNRHYAAKHSGPGELSLCSVCGKSYKHVQLHMRMQHNTKRIKKHICHICSQAFYQPYTLKAHLLRHSGTKDYICDVCGRSYYEKRSLIRHLETHTDALPYACSLCPKAYKVKEGLSQHFSIKHNGRVKKITLYPCELCGKQLRSLLMKNDHMSKHAGKPQHRCNCGRSFYTNKGLTMHQQREHADVSQQMEEHVCEKCTKQFHCASDLRRHTKSCGTAHQAISCRECSDSFLSYNMLRQHTRDQHGHILTFPCSETGCEKSYGSSSGLRQHMHFIHGTGSKPAPKIFACQLCDRIFGQKFFLDNHMTIHTGEKKHVCSTCGKSFRLQSCLRDHTLIHTVEKTAVCSVCSKGFRLKRQLDVHMRIHTGVKPYACDVCHRRFAQSGDRNKHRINTHKNIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -