Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010001765.1:4031-5665[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4e-05 0.0029 19.2 0.8 1 23 74 96 74 96 0.98

2 16 0.017 1.2 10.9 2.0 3 23 103 123 102 123 0.96

3 16 0.0013 0.091 14.4 3.9 1 23 129 152 129 152 0.95

4 16 4.2e-06 0.0003 22.2 4.2 1 23 159 182 159 182 0.97

5 16 0.038 2.7 9.8 0.3 3 23 192 212 191 212 0.97

6 16 0.0033 0.24 13.1 0.8 3 23 221 241 219 241 0.95

7 16 0.35 25 6.7 0.3 1 23 247 269 247 269 0.90

8 16 0.00095 0.068 14.8 1.6 3 23 277 298 275 298 0.93

9 16 0.0026 0.18 13.5 1.2 5 23 312 331 310 331 0.95

10 16 0.0068 0.48 12.1 1.4 1 23 342 365 342 365 0.95

11 16 0.038 2.7 9.8 2.1 3 23 376 396 375 397 0.95

12 16 0.0067 0.48 12.2 3.1 1 23 403 428 403 428 0.93

13 16 0.0023 0.16 13.6 0.2 1 23 436 458 436 458 0.97

14 16 1.5e-06 0.0001 23.7 1.4 1 23 464 486 464 486 0.99

15 16 9.4e-07 6.7e-05 24.3 5.0 2 23 493 514 492 514 0.97

16 16 3.7e-05 0.0026 19.3 0.2 1 23 520 543 520 543 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4e-05	0.0029	19.2	0.8	1	23	74	96	74	96	0.98
2	16	0.017	1.2	10.9	2.0	3	23	103	123	102	123	0.96
3	16	0.0013	0.091	14.4	3.9	1	23	129	152	129	152	0.95
4	16	4.2e-06	0.0003	22.2	4.2	1	23	159	182	159	182	0.97
5	16	0.038	2.7	9.8	0.3	3	23	192	212	191	212	0.97
6	16	0.0033	0.24	13.1	0.8	3	23	221	241	219	241	0.95
7	16	0.35	25	6.7	0.3	1	23	247	269	247	269	0.90
8	16	0.00095	0.068	14.8	1.6	3	23	277	298	275	298	0.93
9	16	0.0026	0.18	13.5	1.2	5	23	312	331	310	331	0.95
10	16	0.0068	0.48	12.1	1.4	1	23	342	365	342	365	0.95
11	16	0.038	2.7	9.8	2.1	3	23	376	396	375	397	0.95
12	16	0.0067	0.48	12.2	3.1	1	23	403	428	403	428	0.93
13	16	0.0023	0.16	13.6	0.2	1	23	436	458	436	458	0.97
14	16	1.5e-06	0.0001	23.7	1.4	1	23	464	486	464	486	0.99
15	16	9.4e-07	6.7e-05	24.3	5.0	2	23	493	514	492	514	0.97
16	16	3.7e-05	0.0026	19.3	0.2	1	23	520	543	520	543	0.96

Sequence Information

Coding Sequence: ATGTACATTGCCCCAGTCTCGGTTGAGCCAATGGGCCACCACGCCATCGAAAGTTCTCGCATCTCTTACTCTGCTGCCAATGTGGTAGTGCTGAAGAGCAAGAAGAAAATGTCGGCTGTCACGAAGACACCACCAGCAGATGCCCTGCAGGAGGAGTGGGACACGGCCCCTGGCAATGAGCAATGGAAATCAACTTCTCGCGCCGTCGCCAAGGCCAAGTACGCTTGCAACACTTGCGGGAGACGGTTCGCTCGCAAGCTGACCTTGCTTCAACATGCCAAGACCCATGCCGTGGAGCCGGCCTCGTGCACTCTCTGCTGCAAGTCCTTCAAGAACGCAATCATGCTCGAGTCACACATGATCCAGCACACGGGAGTTCATCCACACCAGTGTTACGTCTGCCAGAAGGGTTTcatcttcaaatcttcactgCATAAGCATTTGTTGTTGGAGCATGAGCTCAACACGGAATGCTTTAAGTGTGATGAATGTCGGAAATCTTTCTCCACCAGTAGCAAGCTGCAACACCACAAGAAAATTGCCCACGAAACTTCTTCCTCTGACCGCTCGCTCTGCTCCATCTGCAACGAGTCGTTCCCGTGGCACGAGATGAGCGAACATATGATCACCGTGCATGGCGACGGACCTAAGACACACTTGTGCCAGCTTTGCGGGCAGACGTTTGAGAGTGCTGTGACGTACAAGCAGCACGTAGCTCGCCATGTGGGCGTCAAGAACTTCATCTGCGACGTATGCGGTGCTTCGTTCTTGGAGCACAAGCTGCTTACTGAACACTCTGCCTCTCACAGTAGCACCATGCCGTACGGCTGCTCGGAGTGCGGACATTGTTTCCAGCAGAAGGCCACTCTTCTCCAACACATGGCCGACGCACACCAGACCAAACCTGAGGACACTCGCTTCCGCTTCCACTGCGACTGTGGCAAGAGTTTCGGAACCAAGGGAGGCTTCACTATTCATCAGCAGAAAGTCCACGGCGGGGATCCCTTGATCGAGGAAGGGGCTCATGCTTGCTTGCTCTGCGACAGAGTGTTCTTCAGTCGAGCGGGTCAGCAGCGACACATGCTGAAGACTCACCAGACCAACGTTCCCAAGCAGCTGCCGGCCTGCGATCTGTGTCATGTGACCTTCCCCAGCACCAAGGCCATGCGTGACCATCTGCGTGACCACCACAGCTTGACGCTGGAGTACAGCTGCAAGGAGCATGACTGCGACAAGAGCTACTCCACGATGCAAGGGCTCCGCCAGCACGAGAAGTTCTTCCATCAACGAGACCGCAGCATCAAGTATCCCTGCGAGATCTGCGGCAAAGAGTTGAGTCAAGCGTTCACTCGCAGCCAACACATGACCATTCACACTGGTCTCATGAACTACACTTGCGAGCTGTGTAACAAGTCATTCCGTCTGCAGTCCAGTCTTAAGGAGCATCTGTTGACTCATACCGATCTCATGCCGGTGGAGTGTCCCATCTGCAGCAAACACTTCCGCAAGAAGTCACATCTGCGCACACACATCCGCACACATACCGGCGAGAAGCCCTATCAGTGTGACATCTGTGGTCGCGCATTCGCTCAAAGTGGAGATCGCAACAAACATCGTCTTAATATGCATAAGTAG
Protein Sequence: MYIAPVSVEPMGHHAIESSRISYSAANVVVLKSKKKMSAVTKTPPADALQEEWDTAPGNEQWKSTSRAVAKAKYACNTCGRRFARKLTLLQHAKTHAVEPASCTLCCKSFKNAIMLESHMIQHTGVHPHQCYVCQKGFIFKSSLHKHLLLEHELNTECFKCDECRKSFSTSSKLQHHKKIAHETSSSDRSLCSICNESFPWHEMSEHMITVHGDGPKTHLCQLCGQTFESAVTYKQHVARHVGVKNFICDVCGASFLEHKLLTEHSASHSSTMPYGCSECGHCFQQKATLLQHMADAHQTKPEDTRFRFHCDCGKSFGTKGGFTIHQQKVHGGDPLIEEGAHACLLCDRVFFSRAGQQRHMLKTHQTNVPKQLPACDLCHVTFPSTKAMRDHLRDHHSLTLEYSCKEHDCDKSYSTMQGLRQHEKFFHQRDRSIKYPCEICGKELSQAFTRSQHMTIHTGLMNYTCELCNKSFRLQSSLKEHLLTHTDLMPVECPICSKHFRKKSHLRTHIRTHTGEKPYQCDICGRAFAQSGDRNKHRLNMHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -