Lnig028021.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010002909.1:22594-25176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 7.1 8.5 0.2 2 23 63 84 63 84 0.96 2 11 1.9e-06 0.00013 23.3 0.5 2 23 91 112 90 112 0.97 3 11 2.9e-05 0.002 19.6 0.7 1 23 118 140 118 140 0.99 4 11 1.1e-06 7.9e-05 24.1 0.5 1 23 145 167 145 167 0.99 5 11 1.2e-05 0.00087 20.8 2.4 1 23 173 195 173 195 0.99 6 11 0.00015 0.011 17.3 1.0 2 23 202 222 202 222 0.96 7 11 2.2e-05 0.0016 20.0 1.9 1 22 226 247 226 249 0.90 8 11 8.9e-06 0.00064 21.2 7.9 1 23 255 277 255 277 0.98 9 11 0.00034 0.024 16.2 1.5 1 23 284 307 284 307 0.96 10 11 2.7e-05 0.0019 19.7 1.8 1 23 315 337 315 337 0.98 11 11 2.2e-06 0.00016 23.1 1.7 1 23 343 365 343 365 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCTTCAGTGTCTGCTAGTACCGGCTCCTTATCAACCAACAAGTCGGCAGAGCATGTTGGATTTCCTGATATCCATTGCAAAGAGGAGGAAGCTGCAGAAGACGAGTTTCAAGATGAGATAATAGAAGACGATGATCAGCTCCAATCTAAATCTCCTCGATCTCCCAGAGTCATCTCTCGAGTTTGCAACACGTGTGGCCTTGACATGAAGACCCAACAGGCTTTCCGGCAACACCTCGCTGTTCATCCGGATGCCCGTATCGTGAAGTGCAGTTTCTGCGGCAAGAGATTCAACCGTCCCAGTCAGTTGGCCTTGCACGAACGTATTCACACCGGCTTACGTCCGTATCAGTGCGAAGTGTGCGGTCGAGGGTTCTCGGCCAAGGGCTCCATGTGCAAGCATCTCGCCACGCATCGAGCGGAGAAGTACGTCTGCGACGTTTGCAACAAGGGATTCTCTCGGAAGGAGTACATGGAGGAGCATCTTCGTACACACTCTGGTAAAAAACCATACACTTGCGAGGTCTGTCAGAAGACTTTCGTAGGTCGAACTGGGCTTAATCATCATCAGAAGACTCATGACGGAAAGAAGGAAGCTGTTTGCGAGATTTGCGGGAAAAGCTTCACGCGTCATGGGCTCTGGACTCACGTGAAATCACATAATAAGACTTTTAAGTGCTCTACGTGTAATAAAACCTTTTCCACCAGCACTTCACTGCGGATTCACAACTTGGGAACTCATATTGGTCAGAAAGGTCATCAGTGTCATACTTGCGGAAAGTcattttttcagaaaaatcaTCTCATTAGACACATGACAGTTCACAGCGAAGGACACAAGCCATACAAATGTCACAAGTGTCCAAAGGCGTATACATCCGATATGAAACTTCAAATGCATATTGAGAATGATCACTTTGCGCCGGGCTGTTTGCGTTACTCGTGCAACCACTGTGATCGAAAGTTTGCCGGTCGCAGCTCGCTGATTTATCATGAGCGGATTCACACGGGCGAGCGGCCGCACTCTTGCTCCGTCTGCGGGAAGACGTTCATGAGACCCGACAACATGCGTACACatcttctcactcatcagaagCAACCACAATTTTCGCCGAATGTCAACTTACAGCCGATTCGACGGCCGTTTAGCATCAACATCGAAGGGAATTTGTGCTGCAATACTGATGACTCTGACATGATTGTTGCTCCAAACATGATTGCAAATGTGGAGCATCACGTTGCCTCCGACGTGACTGACATTGATGTTCCAGAAGAAACTAACACAGCAACAATCATTGGTGTTACAATTAACAGCTTACTGGTTCATGAAGATGATACATAG
- Protein Sequence
- MASSVSASTGSLSTNKSAEHVGFPDIHCKEEEAAEDEFQDEIIEDDDQLQSKSPRSPRVISRVCNTCGLDMKTQQAFRQHLAVHPDARIVKCSFCGKRFNRPSQLALHERIHTGLRPYQCEVCGRGFSAKGSMCKHLATHRAEKYVCDVCNKGFSRKEYMEEHLRTHSGKKPYTCEVCQKTFVGRTGLNHHQKTHDGKKEAVCEICGKSFTRHGLWTHVKSHNKTFKCSTCNKTFSTSTSLRIHNLGTHIGQKGHQCHTCGKSFFQKNHLIRHMTVHSEGHKPYKCHKCPKAYTSDMKLQMHIENDHFAPGCLRYSCNHCDRKFAGRSSLIYHERIHTGERPHSCSVCGKTFMRPDNMRTHLLTHQKQPQFSPNVNLQPIRRPFSINIEGNLCCNTDDSDMIVAPNMIANVEHHVASDVTDIDVPEETNTATIIGVTINSLLVHEDDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -