Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010002709.1:42377-50634[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7e-05 0.0012 20.4 0.9 1 23 123 145 123 145 0.97

2 15 0.00029 0.021 16.4 1.2 3 23 153 173 152 173 0.99

3 15 0.0011 0.076 14.7 0.3 1 23 281 303 281 303 0.98

4 15 0.35 25 6.8 0.2 1 23 309 332 309 332 0.95

5 15 6.6e-05 0.0047 18.5 5.1 1 23 353 375 353 375 0.98

6 15 0.0032 0.23 13.2 0.0 1 23 386 408 386 408 0.98

7 15 0.0024 0.17 13.6 0.9 1 23 414 437 414 437 0.97

8 15 0.084 6 8.7 1.4 5 19 448 462 445 466 0.91

9 15 0.00053 0.038 15.6 4.7 1 23 472 494 472 494 0.97

10 15 0.0067 0.48 12.2 0.1 3 23 501 521 499 521 0.96

11 15 9.8e-05 0.007 17.9 1.6 1 23 530 552 530 552 0.98

12 15 0.0078 0.56 11.9 0.2 3 23 560 580 558 580 0.97

13 15 3.3e-05 0.0023 19.4 0.2 1 23 586 608 586 609 0.95

14 15 4.1e-05 0.0029 19.1 1.0 1 23 623 645 623 645 0.98

15 15 0.00025 0.018 16.6 0.0 2 20 954 972 953 975 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7e-05	0.0012	20.4	0.9	1	23	123	145	123	145	0.97
2	15	0.00029	0.021	16.4	1.2	3	23	153	173	152	173	0.99
3	15	0.0011	0.076	14.7	0.3	1	23	281	303	281	303	0.98
4	15	0.35	25	6.8	0.2	1	23	309	332	309	332	0.95
5	15	6.6e-05	0.0047	18.5	5.1	1	23	353	375	353	375	0.98
6	15	0.0032	0.23	13.2	0.0	1	23	386	408	386	408	0.98
7	15	0.0024	0.17	13.6	0.9	1	23	414	437	414	437	0.97
8	15	0.084	6	8.7	1.4	5	19	448	462	445	466	0.91
9	15	0.00053	0.038	15.6	4.7	1	23	472	494	472	494	0.97
10	15	0.0067	0.48	12.2	0.1	3	23	501	521	499	521	0.96
11	15	9.8e-05	0.007	17.9	1.6	1	23	530	552	530	552	0.98
12	15	0.0078	0.56	11.9	0.2	3	23	560	580	558	580	0.97
13	15	3.3e-05	0.0023	19.4	0.2	1	23	586	608	586	609	0.95
14	15	4.1e-05	0.0029	19.1	1.0	1	23	623	645	623	645	0.98
15	15	0.00025	0.018	16.6	0.0	2	20	954	972	953	975	0.92

Sequence Information

Coding Sequence: ATGAGTATCCCAGCAGAAGCAGGGAATGCAGTCAGCCTGCGGTGGGAGATGGAGATCATCAATGAAGAAGTTGGAACTGATGATGCAGAAGTCATATGTGGTGTTGCCAATGACTGTGTTTTATTTCCTCAAAATAATGATGAGGGCTTGGAAGTTGTCACTATGGATGTTCACCCGGACTTCCTAGATATTCAAGTGGTAGAGGAAGAGGTTGTTGGAGATTCTTGGGAGAACCAACAATCAAGTGAAGGGGAAATCTTGCAGATACAGATACCTTTGGAGCAAAAGTATACTGCAGTGTACGAGCAAGATGAAGTGGAAATTCCTCTTCCTCAAGACCAAGATTCCTACACAACTATGCGGCCATATCCCTGTGATTTCTGCAGCCGCCGTTTTCGAAAGAAAGCTAACTTGACTAACCATATGATAGCCCATCAGTCGGATCGACCTCACGGATGCAATATGTGTGGAGCAAGATATCACCGAAAGAGTGATCTCGTTACCCACATGAAGATCCATGCGTATGCCCCAGGCCAGGACATGAGCGATGATGAAGATGTGGAGTATGGGTACTTGCAGCAGAATGAAACAAAGATCAAAGGTCGCCGACAGAAACCTGTCAACCCAAGAAAGAGGAAGTCTGCTGCTAATAATATCAACAGAACACAATACAGTCCAGTGAACAACGTTCAAAAGGGGAAAAAGAACAATGCCATACGGAATAAAAGCAACAGCTCTGCTAGTAACTATGTTGACGAAGACATGAAGCTGATGATGCAATCGCCTGTCCGTTATGCTCCTCCTCCTGAGAGAAAACCCATCACTGACCCAAGTCGCCCTTATGTTTGTCAACACTGCGGCGTGGGGTTTGCTAGAGAGAAGGCATTGGGCTCGCACTCTCGCATGCATGCTGGAGACAGCCCCTTCGAATGTACATCTTGTGGGGAAATGTTCTGGGACTTGGCAGTACTTCGAGAGCATTCAAAGACAAAGCACGGAGTCACTTTGCCATTCGAAGAGGAAATCCAGTATACTGGAGACGATCGATTTGGTGACTTCCATTGTGAAACATGTGGACTGTCTTTCCATCGCCAAGATCTTCTCAAACGTCATCGCAGAGTTCACATCAAGCCCGAGGTTGGTCTGGAGAATCAATTTGTCTGCCAAGTTTGCAGTAGCCCGTTTCCCGATCAAGCTGACCTGTTGGCTCATGTGGAGACCCATGCTCGCTACCAACCGCATCGATGCATGCTGTGCGGAGAGTGCTTCATGGATGCTTCTGCTGTGGCTGCCCACGTACGTCGTCGCCACGCCAAGAACATTCCGCCCAATGCTTGCATACAGTGTGGCAAGACGTGCAAGGATCGCCGCTCCTTGCAGAAACACTCCTGGGTGCATTCTGTGGAGCGGAGCTTCTCTTGCTTCAAGTGTGGCAAACGCTTCCACAGTCGAGCACGATTGAAACGACATATGGTATCCCACCGTGACAAGGCGGTGAACTGCGATGATTGCGGTGAGGAGTTTCCGGATGGGCGTGCTCTGATCAACCACCGCCACAGCCACACCAAGGAGCTGGGCTCTCGCCAGTTCCACTGCAACGAGTGTGGCAAGACGTTCGGCTCGCGCAGCAGCCAACAGATTCACGCACGCATTCACACCGGGGAACGTCCGTATGGCTGCCGCTTCTGCTGGAAGGCTTTCGCTGACGGTGGGACACTCCGCAAACACGAGCGTATTCACACCGGGGAGAAACCATATGCTTGTCCGGTTTGCCCACGAGCATTCAATCAGAGAGTGGTTCTCCGAGAGCACATTCGTTCCCATCATTCGGGTCCAGAGCACAAAGTGAGCAACCATCTGCCGATGTACGTGTGCAAGGTTTGCTCCACATCGTTCAACTCATCCGAGGACCTGTGTGCTCATCTGATCAGCCACAGCGACGAGAACACTGCCAAGCACCGAGCACCTCGTCTCGGACCGAGAAAGTACAAGCGAAGGCGCAAGCTCAACTCTGCAGAGCTTACGCTCATTGCAGGTGCTTCTGATGATTTACACTCTGCTGACAGAAGCGGAGGTTCTGCTTCGGAAATGGATGATTTCtttgaggaggaagaagaaccGAAGGAAACGCCTCCTAAGAAAAGAATGAAACTGAAACGAAAATCTAACACTGATAGAAATTTAGACACAGTTGTTAAGACGTTTGAGTCTGTTGtagaaaactttaattcatTTGTGGATGCTGAAAAATCTGAAACCAAGAAATCTAAGAGGAAGCTGAAAACATCACAGAAGAAAAAGAATTTAATTGAGGTAAAGAGCGAGTTTGGAAATGATGAGAAAGTGAAAAAGCCCGGTGCCGTCAGGCTGGGAGGCTTCGTACGGAGCACTCGTCCAACTGGCGAGCCTCGGGTTAGACCTAGGACAAAAAACGTGTCGCTCACTACATTAGCAGCTCTAAAGCCTGTCAGTATCCCAGAAGTTGTTGAAGATCAGAGAGGTCTGGATAAAAACAAAGCAGGTCCTAGAACAAAGAATGTAAACTATCACAATGTAAAGATGGCAAAACTCTCGACAGCAACTTTTCCTGCTAAAAAGTCCCCAAAATCACCAGCGAAAAAGGGCAAAGCTAAAGCTAAGAGGAAAGCTAAGGCCGCTCCTAAAAAGCCTGCTAAGCCGGCGAGTACGTCTCCTCGTAAGCCCACTTATATCACCAACGCGAAGTCCCCCCGTAGAGCTGCAAAGGCAAATGGTAAAGCATCTCCCAGCAAAAGTGAAGCGATTGATAAGGCCGCTTCTTCTCCACCGCCGCCTCTTATAGAATCTGTTAATGTGAAGAGTGAATATGTTTGCGATATTGTTTGCGAGATGTGTGGCGAATCGTTTAGCAACAGATCTGAGTTGTTGATCCATGTCCCCATTCATATATAA
Protein Sequence: MSIPAEAGNAVSLRWEMEIINEEVGTDDAEVICGVANDCVLFPQNNDEGLEVVTMDVHPDFLDIQVVEEEVVGDSWENQQSSEGEILQIQIPLEQKYTAVYEQDEVEIPLPQDQDSYTTMRPYPCDFCSRRFRKKANLTNHMIAHQSDRPHGCNMCGARYHRKSDLVTHMKIHAYAPGQDMSDDEDVEYGYLQQNETKIKGRRQKPVNPRKRKSAANNINRTQYSPVNNVQKGKKNNAIRNKSNSSASNYVDEDMKLMMQSPVRYAPPPERKPITDPSRPYVCQHCGVGFAREKALGSHSRMHAGDSPFECTSCGEMFWDLAVLREHSKTKHGVTLPFEEEIQYTGDDRFGDFHCETCGLSFHRQDLLKRHRRVHIKPEVGLENQFVCQVCSSPFPDQADLLAHVETHARYQPHRCMLCGECFMDASAVAAHVRRRHAKNIPPNACIQCGKTCKDRRSLQKHSWVHSVERSFSCFKCGKRFHSRARLKRHMVSHRDKAVNCDDCGEEFPDGRALINHRHSHTKELGSRQFHCNECGKTFGSRSSQQIHARIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACPVCPRAFNQRVVLREHIRSHHSGPEHKVSNHLPMYVCKVCSTSFNSSEDLCAHLISHSDENTAKHRAPRLGPRKYKRRRKLNSAELTLIAGASDDLHSADRSGGSASEMDDFFEEEEEPKETPPKKRMKLKRKSNTDRNLDTVVKTFESVVENFNSFVDAEKSETKKSKRKLKTSQKKKNLIEVKSEFGNDEKVKKPGAVRLGGFVRSTRPTGEPRVRPRTKNVSLTTLAALKPVSIPEVVEDQRGLDKNKAGPRTKNVNYHNVKMAKLSTATFPAKKSPKSPAKKGKAKAKRKAKAAPKKPAKPASTSPRKPTYITNAKSPRRAAKANGKASPSKSEAIDKAASSPPPPLIESVNVKSEYVCDIVCEMCGESFSNRSELLIHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -