Basic Information

Insect
Leuctra nigra
Gene Symbol
-
Assembly
GCA_934046545.1
Location
CAKOHC010000663.1:115161-119727[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00088 0.063 14.9 0.1 1 23 284 306 284 306 0.95
2 12 5.8e-05 0.0042 18.6 1.6 1 23 314 336 314 336 0.99
3 12 9.6e-05 0.0069 18.0 0.4 2 23 344 365 343 365 0.96
4 12 8.5e-06 0.0006 21.3 0.6 1 23 371 393 371 393 0.98
5 12 4.9e-05 0.0035 18.9 1.4 1 23 400 422 400 422 0.99
6 12 7.5e-05 0.0054 18.3 0.0 1 23 428 450 428 450 0.94
7 12 4e-05 0.0029 19.1 0.2 1 23 456 478 456 478 0.98
8 12 1.7e-06 0.00012 23.5 1.2 1 23 484 507 484 507 0.96
9 12 1.2e-05 0.00083 20.8 0.8 1 23 513 536 513 536 0.96
10 12 5.5e-05 0.004 18.7 3.2 1 23 542 564 542 564 0.99
11 12 0.00026 0.019 16.6 0.4 1 23 570 592 570 592 0.94
12 12 0.00052 0.037 15.6 0.2 1 23 598 622 598 622 0.94

Sequence Information

Coding Sequence
ATGACATCTGAGAAAGAAGCAGAATCTCTAGTGATCTGCTCTGTTCCTTCTGCAACACACTGTTTGATCTGCCACAGCCGACTAGGTGTCTCGTCACGTAACAGCGTTGAAATATTCACCAAGAATCTTTTAACAGATGACCGTCCTGTATCGTATTCAATCAGCGCTGTATTAGGAGATGAATTACAAGATTCGTCATTCCACAGTCAAGTGATATGCAAGAAGTGTTATAAACTCTTGTATGAACTTGATGAAATAGATTCTAGAGGAACTGAGATAAAAGAGGAAATAAGAGCTAATTATAAGCGGACACTGGATAtattagaagaagaaaagaatcCATCCCAGGAGAGTGTGAAAGACAGTGATCGTAAACTTCCATTGGGTTCAGATGATGGCAATGTTGTAAAGTACAAATTGTTAGTACCAAAAGGGCGTAAGAAGATAACACCAAAGAAAATGAAAGGATCCGAAAGTGACGAAGAATCTGAACAAAAGGAAAACACTATCGATGTTGCAATGATTGATCACGACAGTGACAGTGATTTCACTCTAGAGCTCCCTCAAGAAGGGCAAGAGATGACGGTAGAGCACGATGGAGAGCAGATTATTGTCCAGATCAAGATGGAgcctgatgatgatgatgatgatgatgccaGTGATCGTGAGACAAAGCCAAAGAGGATGAAGAGAAAGATTCCCAAAGAGGAGGAACCCGCTCTTCCTGAGAAACTCATTAACAAGGAAGAGACGGACTTTACTTGCTGTCTGTGCCCAGATGAAGAGAAGGCAGTTATGGATATAAAGGGAGTTATTGCCCATTTGAAAACTGTTCACAATGTACGAGTCTACATATGTGACATCTGCGGTCTCGACTTCAAGAAACGAAACGAGTTGTCTGTGCACTTGGACGAGCATGTAGCGACGGAAGAGGGGGACTTCCAGTGCGAGGTGTGCAATCGCATCTTCAGCAACTTGCGCCTGTTCCGAGTGCACAAGCGCATGCACTACCCTCAGAGCAAACTGTGGACGTGCGACACATGTGGCAAGCGCTACAGCTCTCGCAACCTGCTCGAGGAACACACCAACATTCACACTGGTTCACGACCTTACGTCTGCCAAGTGTGTGGAAAGGACTTCGCGTCCAAGTACACATACAAGGCTCATGCAAAGACCCACGAGATCCGACCTCGACCTTATGTCTGTGGTGAATGTCACAAGTCCTTCTTGAGTCCTCAGAATCTTCAACAGCATGAACGAACACACAGCGAAATGAAAAATTACGTATGCGATCAATGCGGCAAAGCTTTCGGTACTGCGCGGAATTTGGAGGTCCATTCTGTTGTTCATTCCGGATTCAAGCCCTTTATCTGCAGAGTGTGCGGCAAAGCTTTCGCTCGCAAGGCTGAGATCCGAGACCACGAGAGGACGCACACTGGCGAGAAACCGTATCAGTGCGAGTTCTGCGGCGCCACCTTCAGTCAGCGCAGCAACTTGCAGTCTCACAAGAGAGCCACTCACTACCAAGACAAGCGCTATAAGTGCAATGACTGTGGGAAAGGATTCAAGCGTCGGCGTCTGCTTGACTACCACTTGAAGGCAGCACATACTGGAGAGCGCCCATTCAAGTGCTCCACTTGTGATGCCACCTTTGTGTACCCCGAGCACTACAAGAAGCACCGGCGCATACACACCGGTGAAAAGCCGTTTTTGTGCGAGGTATGTGGCAAAGCTTTCAACAGCCGAGACAACCGCAACGCTCATCGCTTCGTCCACAGCGACAAGAAGCCTTACGAATGCCTTGTGTGCGGCACGGGATTCATGCGCAAGCCGCTTCTCTACAACCACATGCAGACTCGTGGCCATCTCAACGACACCATCGTCGTCAACCAACCGCGTCTCACCACCGACGATGACATGATCGTAGAGTCTTCCATCGCCGACTTGAACGACGAGGAAGGCAGCGACACCGAGATCATCGCAGGACACTCCGATGCTGACACGAAGCTGTACATTTCTGAGCTCAAGGAGCATGTCATCATCCGCGAGGAGGACGAACATGGCAATTACATTGAAAAGACCGTGATTGTGGGTTCTGATCaagaagacgatgaggaagagttGGTGGGCGACCCAGTGAACCACCTTATCATTGATGGACAGGTTCATTTCGCAGATCCCAACGAGATTGTCAACATGCACGGCGACATCGAGTCTGTAGCAGAGGTGACGACGACAACATCTTCAGACTATGATGGCTCGGAGAACCGCGGCAGGATGGTGGTTGTCCCTGCAACGCCCAACGTCATGTCGGGAGAATGCTACGAAGAGCAAATCACAGGAGACCAGGATGAGGTAACGCTCACGGACCTGTCTCCATCTCAAGAATTGGTGCAGATGAATAGCAATGGACAAGTACACTTAGTGCAGATTCAGCTACCTTCAGGAGAAAATCCCAATGGGAATCGCTGGATCAACATAGTTAATCAAGAGTGA
Protein Sequence
MTSEKEAESLVICSVPSATHCLICHSRLGVSSRNSVEIFTKNLLTDDRPVSYSISAVLGDELQDSSFHSQVICKKCYKLLYELDEIDSRGTEIKEEIRANYKRTLDILEEEKNPSQESVKDSDRKLPLGSDDGNVVKYKLLVPKGRKKITPKKMKGSESDEESEQKENTIDVAMIDHDSDSDFTLELPQEGQEMTVEHDGEQIIVQIKMEPDDDDDDDASDRETKPKRMKRKIPKEEEPALPEKLINKEETDFTCCLCPDEEKAVMDIKGVIAHLKTVHNVRVYICDICGLDFKKRNELSVHLDEHVATEEGDFQCEVCNRIFSNLRLFRVHKRMHYPQSKLWTCDTCGKRYSSRNLLEEHTNIHTGSRPYVCQVCGKDFASKYTYKAHAKTHEIRPRPYVCGECHKSFLSPQNLQQHERTHSEMKNYVCDQCGKAFGTARNLEVHSVVHSGFKPFICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYQDKRYKCNDCGKGFKRRRLLDYHLKAAHTGERPFKCSTCDATFVYPEHYKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGTGFMRKPLLYNHMQTRGHLNDTIVVNQPRLTTDDDMIVESSIADLNDEEGSDTEIIAGHSDADTKLYISELKEHVIIREEDEHGNYIEKTVIVGSDQEDDEEELVGDPVNHLIIDGQVHFADPNEIVNMHGDIESVAEVTTTTSSDYDGSENRGRMVVVPATPNVMSGECYEEQITGDQDEVTLTDLSPSQELVQMNSNGQVHLVQIQLPSGENPNGNRWINIVNQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-