Lnig009472.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010000750.1:1-3180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.022 1.5 10.6 1.1 2 23 1 22 1 22 0.93 2 14 0.0053 0.38 12.5 0.5 1 23 26 48 26 48 0.99 3 14 9e-06 0.00065 21.2 2.0 1 23 54 76 54 76 0.99 4 14 8.9e-05 0.0064 18.1 0.0 1 23 82 104 82 104 0.97 5 14 6e-05 0.0043 18.6 2.0 1 21 111 131 111 133 0.95 6 14 1e-06 7.4e-05 24.1 0.5 1 23 139 161 139 161 0.98 7 14 2.3e-05 0.0017 19.9 1.1 1 23 167 189 167 189 0.98 8 14 0.00043 0.031 15.9 1.4 5 23 198 216 195 216 0.96 9 14 4.6e-05 0.0033 19.0 1.2 1 23 221 243 221 243 0.99 10 14 0.0019 0.14 13.9 4.3 1 22 249 270 249 271 0.90 11 14 2.3e-05 0.0017 19.9 0.7 1 23 277 299 277 299 0.97 12 14 0.00031 0.022 16.3 0.0 2 23 305 326 304 326 0.96 13 14 8.2e-05 0.0059 18.2 0.5 1 23 330 352 330 352 0.98 14 14 0.0031 0.22 13.2 1.1 1 23 354 376 354 376 0.97
Sequence Information
- Coding Sequence
- CAGTGCGACCGCTGCGACAAGAGCTATCTCGACAGCAGAAGTCTGAAGAAGCACTCGGCGCTTCATTCGGGCGAGTTCACCTGCCCGGTCTGCAAGAAGCCGATGCAGACCGACCGCAAGTTGGAGGAGCATCTTCGAACACACACCGGCGAGCGTCCGTTCAAGTGTACGTCGTGCGAGAGCAGCTTCAGCACGAAGGCAGTGTTGACTCGACATATGCGTACACACACCGGCGAGCGCCCCTTCGCCTGCAACATCTGCGGGGCGAGCTACGCGGACAGCAGAGGGCTGAGATCTCACGGCCGAGTCCACGGCCAAGTCGTCCCGACGTTCCCGTGTCAGATCTGCGGCAAGATCTTCTACCTCCCCAACAACCTGAAGACCCACATGAAGTGCCACACGGGGGAGCGGCCGTACCCCTGCCCGATGTGCACGAAACGCTTCCCGAACAACAGTCGGCTGCAGGACCACCTCCGCATGCACACCGGCTCGCGACCCTACAAGTGCGAGATATGCAACACGTCCTTCACGACGCAGCGGGTGTTGAAAATCCACTCCGAGACGCACATCAAACACAAGGAGTACAAATGCGACTGCGGGAAGACGTTCACGAACTTCGTCTACTATAAAACGCACCTGCGGATCCACGCCGGCTTCCAGTACGAGTGTCCGACGTGTGCGAAGACGTACATCACGCGCAGCCGGTACCGAGAACATCTGCGCACGCACACCGGCGAGCGGCCCTACGTCTGCGACGTGTGCAACAAGACGTTCGCCAAGAAGCCGTGTCTGCGGAAACACTGCGCCATGCACCTGCGGGACTCATCCTTCAAGTGCGGCGTGTGCCAGAAGGTCTTCTACGACGCTGGCAAGTTCAAGCGTCACCAGGAGGGCCACGCTGGACTGCGACTGGAGTGCGGGATCTGCGGCAAGGCGTTCCCCGACGACCGCCGCCTGCAGCTGCATCTGAGAGCGCATGCGCAGGCGCACAAGTGCAACGAGTGCGGCGCCGAGTTCCCCTCGAGGCGCGGCCTCGCGCTGCACAGACAGACGCACCAGCACGAGTGTCTGGTGTGCGCGGAGAAGTTCAACAGCGTCAAGGCTCTCACGAGGCATCTCAAGAACCACCTGTTAGAGGCTCAAGCCACAGTATAg
- Protein Sequence
- QCDRCDKSYLDSRSLKKHSALHSGEFTCPVCKKPMQTDRKLEEHLRTHTGERPFKCTSCESSFSTKAVLTRHMRTHTGERPFACNICGASYADSRGLRSHGRVHGQVVPTFPCQICGKIFYLPNNLKTHMKCHTGERPYPCPMCTKRFPNNSRLQDHLRMHTGSRPYKCEICNTSFTTQRVLKIHSETHIKHKEYKCDCGKTFTNFVYYKTHLRIHAGFQYECPTCAKTYITRSRYREHLRTHTGERPYVCDVCNKTFAKKPCLRKHCAMHLRDSSFKCGVCQKVFYDAGKFKRHQEGHAGLRLECGICGKAFPDDRRLQLHLRAHAQAHKCNECGAEFPSRRGLALHRQTHQHECLVCAEKFNSVKALTRHLKNHLLEAQATV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -