Lnig000499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leuctra nigra
Gene Symbol
-
Assembly
GCA_934046545.1
Location
CAKOHC010000034.1:47992-49983[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0032 0.23 13.2 2.4 1 23 101 123 101 123 0.97
2 20 0.0001 0.0073 17.9 1.2 1 23 135 157 135 157 0.99
3 20 0.0041 0.29 12.8 0.4 1 23 163 185 163 185 0.95
4 20 0.00051 0.036 15.7 3.0 1 23 191 213 191 213 0.98
5 20 0.0027 0.2 13.4 0.1 1 23 219 241 219 241 0.97
6 20 0.00054 0.039 15.6 1.6 1 23 247 269 247 269 0.99
7 20 0.0071 0.5 12.1 1.5 1 23 275 297 275 297 0.98
8 20 0.0085 0.61 11.8 0.1 1 23 303 325 303 325 0.97
9 20 0.0018 0.13 13.9 0.1 1 23 331 353 331 353 0.97
10 20 0.00027 0.019 16.5 0.8 1 23 359 381 359 381 0.98
11 20 0.0026 0.18 13.5 3.0 1 23 387 409 387 409 0.97
12 20 5.6e-05 0.004 18.7 1.9 1 23 415 437 415 437 0.99
13 20 0.0071 0.51 12.1 0.6 1 23 443 465 443 465 0.97
14 20 0.0024 0.17 13.6 0.4 3 23 473 493 471 493 0.98
15 20 0.078 5.6 8.8 1.1 1 23 499 521 499 521 0.97
16 20 2.4e-05 0.0017 19.9 1.8 1 23 526 548 526 548 0.99
17 20 0.019 1.4 10.7 0.4 1 23 554 576 554 576 0.97
18 20 0.15 11 7.9 1.2 3 23 584 604 582 604 0.98
19 20 0.008 0.57 11.9 1.1 1 23 610 632 610 632 0.98
20 20 0.00024 0.017 16.7 0.3 1 23 638 660 638 660 0.99

Sequence Information

Coding Sequence
ATGATGGACCAGCACTTGGATGCCGAGAACTTAGTTATCAAGTCAGAGCCGGTTGATGAAGATTCTATGAACATTGaaatagaagaaaatatttGCACAGTTACATCCATCCAACCAAAAGAAGAATATTTAGAACAAAAGCCAAACATCAATGCAGACACGAACTTCCTTCATGTTGATGTAAAATCTGAAGAAAATGCAGAATTATCAAACAatgttgaagaagaagaagatccCTTAAAAGAACAAGCCCAAAACGATGAATTGCAAGATAATCTACTCGTTGGAACCAGTAAGTTGTTCTGTTGCGATGTTTGCAGTTACAAGGGTGCCTCCAGCAGCAATCTTTCTAAACACAAGAGGATTCATTTACTgacgaagaagaggaagaagaagaagaactaCAAATGCAGCCTGTGTGACGTAACATCGAACTCCAAGTACGATTTCATTGTACATCAGCGCACTCATACTGGAGAGCGACCATATGCATGCGACATATGCGAGTACCGATGCGCCCGCAAAGGTTATCTGGTTGCCCACAAGCTTGGCCATTCAGTTGAGAAAAAGTTCCACTGTAGTGGTTGTGATTACAGATCAAACAGGAAGGCTAACCTTGAATATCACATGAGCAAACATTCTGGAGAGCGGCCATATATATGCGAAATTTGCGGGTACAGGAGTCTCAGTAGTAGTAATCTGGCCACACACCAGATTGTCCATTCAAAtgagaagaagttccaatgtAATGAGTGCGATTACAGATCTAACGTTAAATATAGACTTTTAATTCACATGCGTAAACATTCAAGTGAGCGGCCATATGCTTGCGACATTTGCGACTACAGATGTAAACTGAATGGCACTCTGGTCATACACAAGAAACGCCATTCTAGTGAGAAAAGTTTCCAATGCATCGTGTGCGGGTACGGAGTAAATATTAAGAGCGATCTTGTAGTTCACATGCGCAAGCATTCCGGAGAGCGACCATATGCGTGCGACATATGCGACTACAGGAGTATCAGCAATGGTAACCTGGTCACACACAAACTTGTCCATTCGAATGAGAATAGTTTCCGATGCAATGTGTGCGAGTACAGATCTAACGTTAAAGGCAGTCTTGTACGTCACATGCGCAACCATTTAAGTGAGCAGCCATATGCATGCGACATTTGCGAGTACAGATGTACACAACGTAGTTTTCTCGTCAGACACAAGCTACGCCATTCAAATGAGAAGAATTTCCAATGTAGAGAATGCGAGTACAGAACAAACACGAAGTCTACTCTTGTAGTTCACATGCGTAAGCATACTAAAGAGCGGCCATATGCTTGTGACATATGCGAGTATAGGAGTGCACATGCCAGTTCTCTCGGCAGACACAAGTTACGCCATTCCAATGAAAAGAGATTTGGATGTACTGAGTGTGAGTACAAAACAAACACGGAGACACTTCTTGTAGCTCACATGCGCAAACATTCTAGTGAGGGGCGATATGCTTGTGGCATGTGCGAGTTCAGATGTGGACAGCGTAGTTCTCTTGTCGAACACAAGCTAAGCCATGCAAGTGAGATGTTCCGATGTAGCGAGTGTGATCACATGACAACAGTTAAGAGCAGTCTTGTAATTCACATGCGCACACATTCTAGTGATCGGCCATATGCCTGCGACATATGCGAGTATAGGAGTGTACATAAAGGTGGTCTGGTTAATCACAAGCTTAGCCATTCAAATGAGAAGAGTTTCGGTTGCAAAGAGTGCGAATTCAAATCAAAACTTAAACGCGGTATTGTACGTCACATGCGCACACATTCTAAAGAGCGGCCATATGCTTGCGACAGCTGTGAGTATAGGAGTGCACATAGTGGGGATCTGGTCAGACACAAGCGACGTCATTCAAAGGAGAAGAAGTTTAGATGTACCGAGTGTGAATACGGCGCAAATACTAAGGGAGGTCTTAATGTTCACATGCGAAAACATTCTAGCCAGTGA
Protein Sequence
MMDQHLDAENLVIKSEPVDEDSMNIEIEENICTVTSIQPKEEYLEQKPNINADTNFLHVDVKSEENAELSNNVEEEEDPLKEQAQNDELQDNLLVGTSKLFCCDVCSYKGASSSNLSKHKRIHLLTKKRKKKKNYKCSLCDVTSNSKYDFIVHQRTHTGERPYACDICEYRCARKGYLVAHKLGHSVEKKFHCSGCDYRSNRKANLEYHMSKHSGERPYICEICGYRSLSSSNLATHQIVHSNEKKFQCNECDYRSNVKYRLLIHMRKHSSERPYACDICDYRCKLNGTLVIHKKRHSSEKSFQCIVCGYGVNIKSDLVVHMRKHSGERPYACDICDYRSISNGNLVTHKLVHSNENSFRCNVCEYRSNVKGSLVRHMRNHLSEQPYACDICEYRCTQRSFLVRHKLRHSNEKNFQCRECEYRTNTKSTLVVHMRKHTKERPYACDICEYRSAHASSLGRHKLRHSNEKRFGCTECEYKTNTETLLVAHMRKHSSEGRYACGMCEFRCGQRSSLVEHKLSHASEMFRCSECDHMTTVKSSLVIHMRTHSSDRPYACDICEYRSVHKGGLVNHKLSHSNEKSFGCKECEFKSKLKRGIVRHMRTHSKERPYACDSCEYRSAHSGDLVRHKRRHSKEKKFRCTECEYGANTKGGLNVHMRKHSSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-