Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000339.1:417189-426459[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0012 0.084 14.5 1.3 2 23 181 202 180 203 0.95

2 13 0.00071 0.051 15.2 0.5 2 23 209 230 209 230 0.97

3 13 0.00057 0.041 15.5 4.5 1 23 236 258 236 258 0.97

4 13 9.6e-05 0.0069 18.0 0.7 2 23 268 289 267 289 0.96

5 13 8.7e-06 0.00062 21.2 0.2 3 23 297 317 296 317 0.98

6 13 5.9e-06 0.00042 21.8 2.7 2 23 324 345 323 345 0.96

7 13 8.3e-05 0.0059 18.2 0.4 1 23 351 373 351 373 0.97

8 13 4.1e-07 2.9e-05 25.4 2.4 1 23 379 401 379 401 0.99

9 13 0.0026 0.19 13.4 0.4 1 23 412 434 412 434 0.98

10 13 5.4e-05 0.0038 18.7 0.1 1 23 441 463 441 463 0.97

11 13 6.9e-07 4.9e-05 24.7 0.2 1 23 469 492 469 492 0.95

12 13 1.3e-05 0.00094 20.7 0.8 3 23 500 520 499 520 0.99

13 13 0.00011 0.0076 17.8 0.9 1 23 526 548 526 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0012	0.084	14.5	1.3	2	23	181	202	180	203	0.95
2	13	0.00071	0.051	15.2	0.5	2	23	209	230	209	230	0.97
3	13	0.00057	0.041	15.5	4.5	1	23	236	258	236	258	0.97
4	13	9.6e-05	0.0069	18.0	0.7	2	23	268	289	267	289	0.96
5	13	8.7e-06	0.00062	21.2	0.2	3	23	297	317	296	317	0.98
6	13	5.9e-06	0.00042	21.8	2.7	2	23	324	345	323	345	0.96
7	13	8.3e-05	0.0059	18.2	0.4	1	23	351	373	351	373	0.97
8	13	4.1e-07	2.9e-05	25.4	2.4	1	23	379	401	379	401	0.99
9	13	0.0026	0.19	13.4	0.4	1	23	412	434	412	434	0.98
10	13	5.4e-05	0.0038	18.7	0.1	1	23	441	463	441	463	0.97
11	13	6.9e-07	4.9e-05	24.7	0.2	1	23	469	492	469	492	0.95
12	13	1.3e-05	0.00094	20.7	0.8	3	23	500	520	499	520	0.99
13	13	0.00011	0.0076	17.8	0.9	1	23	526	548	526	548	0.98

Sequence Information

Coding Sequence: ATGGCAGATGCAAAATTAAGGGACATATTTTTGGGGCAAACATCTATAGCTCACGAAATAGAGCTACAGGTGTCTGGGGTACCGAGTACTCACCCTTCCCTGTTGTGTGAAACAATTCAAGAAGAGGAGAGCAAGGATACTGAAGAGGAAAGTTTACAAGACGAGAGTATTACAGACAGACTCGAGTTCAGTAATATTGACAAAACTTGCGAGGCGGATGTGTCACAGGAAGAGACTCCTAGCCATGATCTTGACAATGATATTACTGAAGAAAAACCTCAAGAATTGACAATGGATGAGATTGATCACATTCCTACGGATCTTATGGACAATCCGTTTGTGTTTGAATGCACTGGTGCCAGCTACTTTCTCGAAGAACAGCCAGCTGTAGAAAATGGAAATGAGACAGCTTGTGCTGATAGCATTTCTGAGAAGGGACTGTGGTTGATGAATGAAATGGAAGGACATACAATAGATGATCCTACTCAAGCTATTGATGTCTTTGTACAGAAGAATGTTTACCGAAAGAGAGAGATCCAGACTTGCGATGAATGTGGCGAGACGTTCTTTGGCATGAGACCATTGCGACGACACATCCGCCAACATCACACTCCTGCAGCGAATACTTGCGAGTTTTGTGGTGCTCGTTTCAGGGTAGTCTCACAGCTGGAGAGTCATCGCCGACTTCATACTGGTGAAAAACCATTTGCATGTTCCATCTGTGACGAGAAATTTCACTTTCGGAAGCAACTGAGGAGGCACAGATCAACTCATGTGAAAAAGCCAGATTTGTTGCCACTAAATTGTCCCGTGTGCCACAAAGATTATCCGTCAAGAGGTGCACTTTGGCGACACAAGAAGACACATTCCGATGAAGGTAACTCATTGTGCTTTCAATGTGGAAAAGTTTTGTCAAGTCCAGCAAGTCTGCGAGTTCACATGAGAACACATTCCTCTGAGAGGCCGTGTTCTTGTCCCAGCTGCGGAAAGACATTTAGAGATAAAGTGTCTTTAATGAAGCACACGTTGACGCACCTTGACGAAAAATGCTTTGCATGCGAAATTTGTGGAAGACTGTTCTCCAATAAGTCTCTTGTACGTCAACATTATATCAGCCACTCAGGCGTGAAGCCGTACAAATGTGATAAGTGCAACACCGCTTTCAACCGGCGTGGGAACTTGAACCAGCACATGAAGAAGCATGATTCCAACGGCCAGTACAGCAAGCTGCATTACGAGTGCCTAGTGTGTGGCAAGAAGGTGCGCACTGAATTAACACTCAAGTATCATTTGGCCAAGCATACAGGCGAGAAGCGGCCTTACGACTGCGAAGTGTGCGGCAAGCGGTTCAAGGCTGCTGATCCCTACCGTGTTCACATGAGGCTACATACAGgtgaGCGACCTTACGAGTGTCCTGTCTGCCAGAAGGCATTCCGTTCAAGCAGCACGCTCAAACAACACATCCTTGCTCTCCACAAGGACGAGCATCCTCATGGTTGCCCGTACTGTGAGAGACGCTTCAAACGACTGCAGTCGTTGATCGTCCACCGACGAACACACACCGGGGAAAAGCCGTACGCGTGCCACATCTGCGCGCGTGCGTTTGCGCAACGCGGCGACATGATGAAGCACACCAAGACACATTTACGTAGTCGCAGTTCCAAGTGTGACATCGAAGAGGAACAGTACGTTATGCATATCGACAGTATAACGGAGTTGGCATTGAGTGACTCGGACATCACGAGTGAGTATCTCATTGACATGCCCATAGTTGAGGTCGAGACAGAGATTCACTGTGAGTCGGGTATGTTGTAA
Protein Sequence: MADAKLRDIFLGQTSIAHEIELQVSGVPSTHPSLLCETIQEEESKDTEEESLQDESITDRLEFSNIDKTCEADVSQEETPSHDLDNDITEEKPQELTMDEIDHIPTDLMDNPFVFECTGASYFLEEQPAVENGNETACADSISEKGLWLMNEMEGHTIDDPTQAIDVFVQKNVYRKREIQTCDECGETFFGMRPLRRHIRQHHTPAANTCEFCGARFRVVSQLESHRRLHTGEKPFACSICDEKFHFRKQLRRHRSTHVKKPDLLPLNCPVCHKDYPSRGALWRHKKTHSDEGNSLCFQCGKVLSSPASLRVHMRTHSSERPCSCPSCGKTFRDKVSLMKHTLTHLDEKCFACEICGRLFSNKSLVRQHYISHSGVKPYKCDKCNTAFNRRGNLNQHMKKHDSNGQYSKLHYECLVCGKKVRTELTLKYHLAKHTGEKRPYDCEVCGKRFKAADPYRVHMRLHTGERPYECPVCQKAFRSSSTLKQHILALHKDEHPHGCPYCERRFKRLQSLIVHRRTHTGEKPYACHICARAFAQRGDMMKHTKTHLRSRSSKCDIEEEQYVMHIDSITELALSDSDITSEYLIDMPIVEVETEIHCESGML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -