Lnig004627.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010000346.1:101468-108587[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.2 4.4e+02 2.8 0.6 7 19 60 72 54 73 0.91 2 19 0.00022 0.016 16.8 1.9 1 19 87 105 87 106 0.97 3 19 4.7e-05 0.0034 18.9 1.6 1 20 120 139 120 141 0.95 4 19 0.00022 0.016 16.8 1.9 1 19 156 174 156 175 0.97 5 19 0.00022 0.016 16.8 1.9 1 19 189 207 189 208 0.97 6 19 4.7e-05 0.0034 18.9 1.6 1 20 222 241 222 243 0.95 7 19 0.00022 0.016 16.8 1.9 1 19 274 292 274 293 0.97 8 19 4.7e-05 0.0034 18.9 1.6 1 20 307 326 307 328 0.95 9 19 0.00022 0.016 16.8 1.9 1 19 352 370 352 371 0.97 10 19 0.00022 0.016 16.8 1.9 1 19 385 403 385 404 0.97 11 19 0.00022 0.016 16.8 1.9 1 19 418 436 418 437 0.97 12 19 0.00022 0.016 16.8 1.9 1 19 451 469 451 470 0.97 13 19 0.00089 0.064 14.9 0.7 1 19 484 502 484 503 0.96 14 19 3.8e-05 0.0027 19.2 1.5 1 21 517 537 517 538 0.94 15 19 0.00022 0.016 16.8 1.9 1 19 552 570 552 571 0.97 16 19 4.7e-05 0.0034 18.9 1.6 1 20 585 604 585 606 0.95 17 19 1.4e-05 0.00099 20.6 0.3 1 23 614 636 614 636 0.98 18 19 0.00025 0.018 16.7 2.1 1 20 653 672 653 674 0.96 19 19 2.6e-05 0.0018 19.8 4.2 1 23 682 705 682 705 0.96
Sequence Information
- Coding Sequence
- ATGGGCAGCGCGTTATTACCCAACTGCCGTGAGCAACGAGACTTTAGTATCCAGCAGATATCCATGTCCAACTTGTTTCAAGACCTTCAGCAGAAACACCGCCTTGAACGCACATCCTCGCCTCCTGCAGTGAGCGTCACTAAGTGGAGGTCGCGCCAGTTCCCCTGCCACAGTTATAACAAGGTGTTCAACAGCAGTCACGCACTCAAAGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAAGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACCTCACGTATGAGTCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACCTCACGTATGAGTGTGGACGAGTTCTAAACGCCTCTGAATGTTACAGCCTCGCCTCCTGCACCTCGCCTCCTGCGCACACTAAGTGGAGGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAGGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACCTCACGTATGAGTGTGGACGAGTTCTAAACGCCTCTGCATCCTCGCCTCCTGCGCACACTAAGTGGAGGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCTCGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACGTATGGCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACTCACCCTCGCCTCCTGCGCACACTAAGTGGAAGTCGCGCCAGTTCCCCTGCCACCAGTGTAACAAGGTGTTCAACAGCAGCCACGCACTCAAGGCTCACCTCACGTATGAGTGTGGAAGACCGCCGCAGTTTCCTTGTCCGATATGTAACGGAGCTTACAGTCTCAAGAGTCATCTCATCACGCATATGAGGGTCCATAACATCAGTAACAAGAAGATAACAAGAACAAGCGACCTGCGTCACCGCTACCGCTGCGCGAATTGCTCCAAGAGCTACATGAACCGGAGCCATCTCAGCAGACATATGAGCTTCGAGTGCGGCAAAGAACCGCAGTTCTCGTGTCCGTATTGCGCCAAGTGCGTCAAACACAAGTCCAACCTGCAGCGCCATATTCTCAACATGCATTCCACTCAACGATAG
- Protein Sequence
- MGSALLPNCREQRDFSIQQISMSNLFQDLQQKHRLERTSSPPAVSVTKWRSRQFPCHSYNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHLTYESSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHLTYECGRVLNASECYSLASCTSPPAHTKWRSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWRSRQFPCHQCNKVFNSSHALKAHLTYECGRVLNASASSPPAHTKWRSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSLALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSRMASPPAHTKWKSRQFPCHQCNKVFNSSHALKAHSPSPPAHTKWKSRQFPCHQCNKVFNSSHALKAHLTYECGRPPQFPCPICNGAYSLKSHLITHMRVHNISNKKITRTSDLRHRYRCANCSKSYMNRSHLSRHMSFECGKEPQFSCPYCAKCVKHKSNLQRHILNMHSTQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -