Lnig030325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leuctra nigra
Gene Symbol
ZNF236
Assembly
GCA_934046545.1
Location
CAKOHC010003348.1:42776-58330[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00011 0.0082 17.7 0.6 1 23 205 227 205 227 0.98
2 28 0.043 3.1 9.6 0.5 1 23 233 255 233 255 0.97
3 28 4.4e-05 0.0032 19.0 0.9 2 23 261 282 260 282 0.94
4 28 0.12 8.4 8.2 0.2 3 23 290 310 288 310 0.95
5 28 0.00019 0.013 17.0 4.0 1 23 321 343 321 343 0.98
6 28 0.0027 0.19 13.4 7.1 1 23 366 388 366 388 0.98
7 28 1.2e-05 0.00087 20.8 1.6 1 23 394 416 394 416 0.98
8 28 0.00034 0.024 16.2 0.1 1 23 422 445 422 445 0.97
9 28 0.026 1.8 10.3 4.7 1 23 455 478 455 478 0.97
10 28 0.00015 0.011 17.4 0.2 2 23 592 613 591 613 0.97
11 28 3.3e-05 0.0024 19.4 2.9 1 23 619 641 619 641 0.99
12 28 8.8e-05 0.0063 18.1 2.1 1 23 647 669 647 669 0.97
13 28 0.00013 0.0091 17.6 1.8 1 23 675 698 675 698 0.96
14 28 3.7e-05 0.0026 19.3 2.9 1 23 755 777 755 777 0.99
15 28 0.031 2.2 10.1 1.0 1 23 783 805 783 805 0.98
16 28 4e-06 0.00029 22.3 1.3 1 23 811 833 811 833 0.98
17 28 3.1e-05 0.0022 19.5 3.6 1 23 839 861 839 861 0.98
18 28 0.00025 0.018 16.6 2.6 1 23 1105 1127 1105 1127 0.99
19 28 0.00061 0.044 15.4 0.4 1 23 1133 1155 1133 1155 0.98
20 28 0.0019 0.14 13.9 1.7 1 23 1161 1183 1161 1183 0.98
21 28 0.028 2 10.2 2.4 1 23 1189 1211 1189 1211 0.98
22 28 5.4e-07 3.8e-05 25.0 0.3 2 23 1294 1315 1294 1315 0.97
23 28 0.00072 0.052 15.2 5.2 1 23 1321 1343 1321 1343 0.99
24 28 3.2e-05 0.0023 19.4 4.4 1 23 1349 1371 1349 1371 0.98
25 28 0.0014 0.097 14.3 2.0 1 23 1377 1399 1377 1399 0.98
26 28 0.00013 0.0095 17.5 0.4 2 23 1605 1626 1605 1626 0.95
27 28 1e-05 0.00071 21.1 1.3 1 23 1632 1654 1632 1654 0.99
28 28 0.042 3 9.6 2.0 3 23 1662 1683 1660 1683 0.90

Sequence Information

Coding Sequence
ATGGAGACGATAGTGACAGACATGGAGGAAAACGTGGATGCTCAACACATAACGTCGCTGACTACAGAACAAGTTCTCGCAGCGACAAGTGGGGGATTCATGTTCGCGATAGATTCTGGACATGGGCTCTCTGGAAATGGTAATGGAACCACTACATATGTTACGCTCCCGCTCCACCTTCTACAAGACTCCAGCAATTTGGATGGCGGAGCGGTCTCCCTCTTCCTGGATTCTAACCAGTTGACCCTCCTGTCGGGAGGCGGTTCCCAACTGCCGATGCACACTTCTGGCTTAGACGACGGCGATGGTCAACTCATCTTGGACGTCAGTGGAGGGGACAACGAGGACATCATCGATAAGACCACAAGCATAAGAGAGTTGGACATGTCATCGTTGGAGTTTTCTAATTTATCTGtgaaaaataatgtaattgtcAGTGTTGTGGATGAGTGTGAGGAGGAGATGGCTGATAAGTTGACTCTACAATACGGCGGCGTCAACAAGCATGTGGTTCCACTCAAGGAGTCTCAGATTAATGTGCCGAGGAGAGGCCCAGGCAGGCCGAGGAAAGATGAGGCAGATGTCGTTGACCCACCCATTGGCAAGGGTCCATTCAGATGCAATATGTGTCCGAAAGAGTTTTCTGTGTGGGCTCAAATGAAGAAACACAGTAAAATACACTTGGAAGACAAACCACACAGTTGCACTATGTGCTTGGATAGCTTCAATGTACAGGCAAACTTGGTTCTTCACATGGCCACGCACGCAACAGAGAATCTGCGCTGCCCCGAGTGTCACAAGACGTTCTCGCGAGTGGCGAGTCTCAAAGCCCATGTGACTCTGCATCAGCAAGAGGAGAGCCTCTTCTGCTCGGAATGTGGCGACGAGTACAGCACGCAAGCGCAGCTTGACAATCACAAGCAGGAGCACCAGCAGGAGTGGGTGAAGAACACTCGCGCGCACCAGTGCCGGAAGTGTCAGAGACAGTTCACGCGCGCCTCGGCGTTCAGGGAACACATGAGGGAACACtacagagtgcgcgcctcccTGCATCACAAGGCTCACAAGCGGAACATAGATCGGAGTGCCTTCACGCATAAGTGCTTCACGTGTCACAAGCTGTTCCAGAAGCCAAGCCAGCTTGTCCGGCACCAGCGCACACACACCGGCGAGCGGCCGTACGAGTGCATGCTTTGCGGCAAGAAGTTCTCTCAGAAGGGCTCCCTCCATATCCACATGGCGAAACACAACGGCTCTCGACCGTACAGCTGCGAGTTCTGTCCCGCGCTGTTCAGTCAGAAGGGCAACTTGCGCGCACACATCGCGCGAGTGCATGCGATACCCAACAACGGAGAGGAGGTGCACAAGTGCATGGACTGCACGTGCGTCTTCAAGAAGCTCGGCAGTCTCAACTCGCACATCAGTCGGACGCATTCCGGGGACGATCCCAAGAAGACAATGAGTGCTGCTTATGAGATGGAAGTGAACGTGAAGGCCGCCCTGGCCGAGCTGGCCTCGCTGGGCAGCAGCGGAGCGCAACGCCAGCAAGACGAGGACGACATCCTGCAGCAAGCGCTGGCCAACAGCGGTCTCGGGGACCCCGCCAAGCCGACGGTACCGCAGGACTCCATGTTCATCCGACGGATCAAGCGATCCCCCTCGCAGGACAAGCAGACTTTCTCCGACCTTGTCCAGCTCTCGGACCAGGGGCTCGATGGGATGGTCCGTCGGTTCACGATACGCTCACGCACCATCGACAAGGTGCGCTGGCTGGAGTGTTCCTACTGCGCAAAGGAGTTCAAGAAGCCGTCTGACGTGGTGCGTCACATCCGCATCCACACCCACGAGCGCCCGTACAAGTGCGTGCATTGCTTCCGATCCTTCGCCGTCAAGTCTTCGCTCACGGCCCATCTCAAGACACACACCGGCACCAAGGACCACAGTTGTCCGGTCTGTCAGAAGCAGTTCACCACCATGAGCAGTCTCAAAGTGCACTCCAGGATCCACACGGGCATGAAGCCATTCCCTTGCACGCAGTGCGACCGCCGCTTTCGAACGACTGGGCACCTGCGGTCCCACACGCTGATCGCGCACAAGCCCGGCAAAGTGGCGCGTGTGCGACAGCCTCGCGGGAAGAAGGCATTGGCTGCCGACGTGGCGCTCCTGCAGGAGCCGATGATGGTGACGGAGGCGGGACTCGTGCAGCTGTGTCGACGACCCAAGCCGTTCCTCCTCGGCGATGCCGTCAGTGTGGATCGCCCGTACAAGTGCGGCGTCTGTTCGCTGGCATTCCGCAAGTCATCGCATCTGCAGCAGCACACCAGAATGCACACCGGCGAGCGTCCCTTCAAGTGCCTGCAGTGCAACAAGGGCTTCCTGACCAAGGGCATCCTGAAGAACCACATGCGAGCTCACGAGGGCGTGAAACCCTTCAAGTGTGACCGCTGTGACTTTGTCTTCTCCACCAACGGGAGCCTCAAGCGCCACATGGGCACACACAGCGACGTGCGGCCCTTCATGTGTCCTTACTGCCAGAAGACGTTCAAGTCCACCATCAACACGAGGAAGCACATGAAGACGCACGTAGCGGAGTTGACATTCCAACAGGGTGGTCTGACACTTGATGACAAGGCTGCCTTGATGTCTGACAACCAGAACCTTGGCGAGACGTTGAACCAAGAAACACACTTCTCAGCTCCTGACTTTGCTCAAGCCTTCTCCGATCAGCCGTTCAACGTGGAAGAGAACGAGGAGATTGCCGTCTCCGACAATATCTCATATGCAGTGGAGAGACTTGGTCCTGGTGCAAGCGTAATAACGCACACGCTCCACGCCGACGCGTCTGGCATGATCACGCTGCCCGACGTGCCAAGCGCGCTGACTCAAGAGAACATCCGCGAGATCGAGCGCACGCTCAACGAGCAGATCTTCGGCGATGCAGTCACCGAGGAAGATGGCCAAGGAGTCGACAGCGACCTCGAGTCCACGACCACCGAGGATCTGGCGCGGACTCTAGCGGCGGAACCGACCACACCGGCACACGGCACGGGCAAGGCTGCCAACCCGCTGTACGAGACACTTGGGTTCGACTTCGCGGGGATCAACATGCAGGGTGACGTGATGACCTTGGATGACCCCGAACTGTCGAGCAGTATGGCGTGTCTTCTGTCTCGACAAGAGCCATCCCTGGTTCAGACCGAGCCCGACATCAACCCTGATCTCATCCCCGCCTACTCCGATGAAGAGTCGGATGTTGAGGTGggggtggaggtggaggtgaaGAGCAAGAAGAAAGAAAATGCAGCCAGCCCATATGTCTGTCCAGTGTGCAACTTCCGCTTCAAGAAAGTGAGCCATCAGAAAGCTCACATGAACACACACACGAGAGTGAAGCCCTTCTCCTGTGACATCTGCGGCAAGAAACTCTCCACCGCCAACGCCAAACGAACTCACATGCGGGCGCACACGAAGACGAAGGACTTCACCTGTCGCATCTGCCAGTGTCGGCTGACGACCAACGGCTCACTCATACGACACATGGACGTCCACAGCAACAAGCGGCCGTTCAAGTGCTGCATCTGCTCGGAGCTGTTCCGCACAGACATGGAGCTACGAAGTCACATCAAGCTGCACGTGCCGCGCGAGAAGGCTGGTCAGGTGGTGGCGGCCAAAGCTGCCGTGCCGTCTACACGCGGCCGTCGCCGAGCCTCTGTCATCCGACTCACGGCCGAGGAGACCGAGAACTTGGCCAAACAGTCAATGCAGGAAGCATCGTCGGTCTCGGAGGAGGTACTTATTGCATCGGCGGCAGAGGCCAACAGAATCAGCGAGATCAGGGACCCAGAGGATCAGTATCAGTTGGAGCCGTTGTATCCAAACGTGTGCAACTACTGTCCGAAAAGCTTTCGAAAACCATCGGACTTGGTCCGTCATCTTCGTATCCACACTGGTGAGCGACCGTACAAATGTCAGTCGTGCAGCAAATGCTTCACTGTCAAGTCGACGCTCGACAGCCATCTCAAGACTCATGTCGGAGAGAAGAGCTTCACGTGCCACGTCTGTCACTCCGTGTTCACCACCAAGGGCAGTCTCAAGGTCCACATGCGCCTGCACACGGGTTCGAAACCGTTCAAGTGTCCATTGTGTGAGCAACTGTTCCGTACGTCAGGGCATCGCAAGGCTCACATGTCGATGCATCTGCGTCCTAAAGCACAGAAGAAGTTGGGTCATCTGGCCAAGATCGTGCAAGAGAACAAGCCGCCGGTTGAGCTGCTCCCCGAACCAGGCCAGATTGCCGCTGAAACTAACTTGGACGAGTTTGTGGACATCGAAGGATTCCACGCGTTGACCACCGAGGAGAGTACTGCAAAGAACTACCAGCAGGACCTGGCAAACAGCATGCAGATCACTGGCGTCGACCAGTCAGGAAGTTTGCTGAGCACTTCGCAGCCGATGCAGATCGATGAAGCACTTCTTCAGCAGTTACAGAACTCGAATATCATCATTCAGAGTTCATCTTCCGACTTGAACGGAACCAATGTGTTTAATACAGGCGACGCGAATGGCAACTTGCGGTTCGAAATACACACGGACGAGCACGGTCAGATCATCAACATCCAGCCGATGCAGGACGACGGTAACATCATGTTCAATCTCAGCGAGGACTTCAATATGGTTGCCGAAGAAGAGAAGCCGATCCCGGCCAAACCGCCGCGTGCTCGAGCTTCCGAGAGTAAGCAAAAGAAGAAACCTCCTGCAGCAACGGCCAAGAGAAGAAAGAAACTACAAAAGAGTGACAAAGAATTCGCAAACGAGTGCGACCAGTGTTCAAAAACTTTTGAGAAACCGAGTCAACTTCAGAGACATGGACTTATTCACACAGGCGAGAAACCGTTCAAGTGCATGGTGTGCGAGCGAGCGTTCAATCAGAAGAATTCTCTGAAGATTCACATGCGATCGCACACGGGTCACCGACCTCACAATTGCATTCTTTGCGATTATTCCTCCACGCAAAGAGGCAATCTGCGGACACACTTGAAGAAAGTTCACGGTGTAGACGGCAACACAAGTGACTCGGAATTCTACAATCCTGCGAAAAGCTTGTTTCGTGCAGACCCAGATTTAATGGTGCGATTGGATATAGACAATCTGGTAGAGGACGGTTTGTTTCCTACTGATTTACATATTTCTTACTCTTCTACAACGTAG
Protein Sequence
METIVTDMEENVDAQHITSLTTEQVLAATSGGFMFAIDSGHGLSGNGNGTTTYVTLPLHLLQDSSNLDGGAVSLFLDSNQLTLLSGGGSQLPMHTSGLDDGDGQLILDVSGGDNEDIIDKTTSIRELDMSSLEFSNLSVKNNVIVSVVDECEEEMADKLTLQYGGVNKHVVPLKESQINVPRRGPGRPRKDEADVVDPPIGKGPFRCNMCPKEFSVWAQMKKHSKIHLEDKPHSCTMCLDSFNVQANLVLHMATHATENLRCPECHKTFSRVASLKAHVTLHQQEESLFCSECGDEYSTQAQLDNHKQEHQQEWVKNTRAHQCRKCQRQFTRASAFREHMREHYRVRASLHHKAHKRNIDRSAFTHKCFTCHKLFQKPSQLVRHQRTHTGERPYECMLCGKKFSQKGSLHIHMAKHNGSRPYSCEFCPALFSQKGNLRAHIARVHAIPNNGEEVHKCMDCTCVFKKLGSLNSHISRTHSGDDPKKTMSAAYEMEVNVKAALAELASLGSSGAQRQQDEDDILQQALANSGLGDPAKPTVPQDSMFIRRIKRSPSQDKQTFSDLVQLSDQGLDGMVRRFTIRSRTIDKVRWLECSYCAKEFKKPSDVVRHIRIHTHERPYKCVHCFRSFAVKSSLTAHLKTHTGTKDHSCPVCQKQFTTMSSLKVHSRIHTGMKPFPCTQCDRRFRTTGHLRSHTLIAHKPGKVARVRQPRGKKALAADVALLQEPMMVTEAGLVQLCRRPKPFLLGDAVSVDRPYKCGVCSLAFRKSSHLQQHTRMHTGERPFKCLQCNKGFLTKGILKNHMRAHEGVKPFKCDRCDFVFSTNGSLKRHMGTHSDVRPFMCPYCQKTFKSTINTRKHMKTHVAELTFQQGGLTLDDKAALMSDNQNLGETLNQETHFSAPDFAQAFSDQPFNVEENEEIAVSDNISYAVERLGPGASVITHTLHADASGMITLPDVPSALTQENIREIERTLNEQIFGDAVTEEDGQGVDSDLESTTTEDLARTLAAEPTTPAHGTGKAANPLYETLGFDFAGINMQGDVMTLDDPELSSSMACLLSRQEPSLVQTEPDINPDLIPAYSDEESDVEVGVEVEVKSKKKENAASPYVCPVCNFRFKKVSHQKAHMNTHTRVKPFSCDICGKKLSTANAKRTHMRAHTKTKDFTCRICQCRLTTNGSLIRHMDVHSNKRPFKCCICSELFRTDMELRSHIKLHVPREKAGQVVAAKAAVPSTRGRRRASVIRLTAEETENLAKQSMQEASSVSEEVLIASAAEANRISEIRDPEDQYQLEPLYPNVCNYCPKSFRKPSDLVRHLRIHTGERPYKCQSCSKCFTVKSTLDSHLKTHVGEKSFTCHVCHSVFTTKGSLKVHMRLHTGSKPFKCPLCEQLFRTSGHRKAHMSMHLRPKAQKKLGHLAKIVQENKPPVELLPEPGQIAAETNLDEFVDIEGFHALTTEESTAKNYQQDLANSMQITGVDQSGSLLSTSQPMQIDEALLQQLQNSNIIIQSSSSDLNGTNVFNTGDANGNLRFEIHTDEHGQIINIQPMQDDGNIMFNLSEDFNMVAEEEKPIPAKPPRARASESKQKKKPPAATAKRRKKLQKSDKEFANECDQCSKTFEKPSQLQRHGLIHTGEKPFKCMVCERAFNQKNSLKIHMRSHTGHRPHNCILCDYSSTQRGNLRTHLKKVHGVDGNTSDSEFYNPAKSLFRADPDLMVRLDIDNLVEDGLFPTDLHISYSSTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-