Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000701.1:21145-22911[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.28 2.1e+02 2.9 0.1 16 24 42 50 36 51 0.86

2 11 0.28 2.1e+02 2.9 0.1 16 24 92 100 86 101 0.86

3 11 0.28 2.1e+02 2.9 0.1 16 24 142 150 136 151 0.86

4 11 0.28 2.1e+02 2.9 0.1 16 24 192 200 186 201 0.86

5 11 0.28 2.1e+02 2.9 0.1 16 24 242 250 236 251 0.86

6 11 0.28 2.1e+02 2.9 0.1 16 24 292 300 286 301 0.86

7 11 0.28 2.1e+02 2.9 0.1 16 24 342 350 336 351 0.86

8 11 0.28 2.1e+02 2.9 0.1 16 24 392 400 386 401 0.86

9 11 0.28 2.1e+02 2.9 0.1 16 24 442 450 436 451 0.86

10 11 0.28 2.1e+02 2.9 0.1 16 24 492 500 486 501 0.86

11 11 0.019 14 6.6 0.0 13 24 538 550 534 551 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.28	2.1e+02	2.9	0.1	16	24	42	50	36	51	0.86
2	11	0.28	2.1e+02	2.9	0.1	16	24	92	100	86	101	0.86
3	11	0.28	2.1e+02	2.9	0.1	16	24	142	150	136	151	0.86
4	11	0.28	2.1e+02	2.9	0.1	16	24	192	200	186	201	0.86
5	11	0.28	2.1e+02	2.9	0.1	16	24	242	250	236	251	0.86
6	11	0.28	2.1e+02	2.9	0.1	16	24	292	300	286	301	0.86
7	11	0.28	2.1e+02	2.9	0.1	16	24	342	350	336	351	0.86
8	11	0.28	2.1e+02	2.9	0.1	16	24	392	400	386	401	0.86
9	11	0.28	2.1e+02	2.9	0.1	16	24	442	450	436	451	0.86
10	11	0.28	2.1e+02	2.9	0.1	16	24	492	500	486	501	0.86
11	11	0.019	14	6.6	0.0	13	24	538	550	534	551	0.86

Sequence Information

Coding Sequence: ATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACTCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTAATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACCCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTAATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACTCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGTGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACTCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCACTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACCCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTAATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACCCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACCCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACTCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACCCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTCCTTATCCCCCCCACTCCTCTACAAGACCCGGTGCGTGATGTCAGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTAGTTGTCCTTATCCCCCCCACTCCTCTACAAGACCCGGTGCGTGATGTCGGGAGCATGAGTCAGTGTCGGGCAGCTCGCATGCCGCGGGATGCACTCTGGCCGGCTGATCCGCGCTGTGGGGTGCAACAGGTCCTGAGGGCGCTACAAGTTGTTGTccttatcccccccccctcctctacAAGACCCGGTGCGTGA
Protein Sequence: MPRDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPANPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPANPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPWDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPADPHCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPANPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVRSMSQCRAARMPRDALWPADPRCGVQQVLRALQVVVLIPPTPLQDPVRDVGSMSQCRAARMPRDALWPADPRCGVQQVLRALQVVVLIPPPSSTRPGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -