Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000529.1:1-31144[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.1 8.6e+02 0.9 0.0 19 30 355 366 345 367 0.94

2 11 6.2 4.8e+03 -1.4 0.0 19 29 396 406 395 407 0.93

3 11 1.3 9.9e+02 0.8 0.0 19 30 461 472 451 472 0.94

4 11 1.3 9.9e+02 0.8 0.0 19 30 502 513 492 513 0.94

5 11 1.3 9.9e+02 0.8 0.0 19 30 543 554 533 554 0.94

6 11 1.3 9.9e+02 0.8 0.0 19 30 584 595 574 595 0.94

7 11 1.1 8.6e+02 0.9 0.0 19 30 625 636 615 637 0.94

8 11 1.1 8.6e+02 0.9 0.0 19 30 666 677 656 678 0.94

9 11 6.4 5e+03 -1.5 0.0 19 30 707 718 706 718 0.91

10 11 1.3 9.9e+02 0.8 0.0 19 30 748 759 738 759 0.94

11 11 1.1 8.9e+02 0.9 0.0 19 30 789 800 779 801 0.94

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.1	8.6e+02	0.9	19	30	355	366	345	367	0.94
2	11	6.2	4.8e+03	-1.4	19	29	396	406	395	407	0.93
3	11	1.3	9.9e+02	0.8	19	30	461	472	451	472	0.94
4	11	1.3	9.9e+02	0.8	19	30	502	513	492	513	0.94
5	11	1.3	9.9e+02	0.8	19	30	543	554	533	554	0.94
6	11	1.3	9.9e+02	0.8	19	30	584	595	574	595	0.94
7	11	1.1	8.6e+02	0.9	19	30	625	636	615	637	0.94
8	11	1.1	8.6e+02	0.9	19	30	666	677	656	678	0.94
9	11	6.4	5e+03	-1.5	19	30	707	718	706	718	0.91
10	11	1.3	9.9e+02	0.8	19	30	748	759	738	759	0.94
11	11	1.1	8.9e+02	0.9	19	30	789	800	779	801	0.94

Sequence Information

Coding Sequence: GTGGTGCTGGTGATGTGCGGGGTGTGGGTTCGCATCCTGGGCATCTCCGTGCCCGTCTATCCAGCGAGACAGCCGCATCAACTGGTCCAGCCAGTGCTCTTCTACACGCAGCCTAAGACGCGGGTCCAGTCGCAGCATCCCTTGATCGCGATAGATCATCAGTATGCGGCCATTGAACTTGGGTCCGTGGGTACACCGTACCTAGTTGCCTCCGCCTCCGTCGCCGACCCCCACCTGGCCGCCGCCTCCCACAAACACGGGTCAACCGTCGGCGGCAAGGCAGCCAAGGGTCACCTCATCATCGCCGACCACAAGTCCAGCGGCGAAGGTTCGTCGTCGTCCTCAAAGTCCTCCGGCAAACACATTGAAGAGGGAAAGAGAGGAGAGGAGGGTAAAGAGAGAGACAAGAACGATCACTCCGAAGATGGGGGAAAGAAGACTTCACATCATGATTCGGCGTCTAAAGGAGGATATCATGATGAACATAGTGGGGGGAGTAAAGGAGAGAGATATAAAGGAGGCGGGGGATTCAATAAAGGAGGATTCACGAAAGGATATAGAGATAAATATAAGAAGAATGAGTATACTAAGTTTGATAAGTTCTGGAATGATGGACATAAGAAAGGGGATTTCCATAAGTTTGGCAGCGAAGGTTCGTCGCATTATGGAATAGGAAAGTCGCATAAAAAGGGAGGAAGTGATAAGAAAGGAGCAGCGGAGAATGCGCACGGGAAGAAGGGCGGGTTCGCCAAAGGTCACGACACCTCCGATCACAAGGGCTATGCCGGTAAAACAGGTCACGAGGAGCAACACTCGAGTCACGCTGAATTCTCAAAGAACAAAAAGGGAGTGATCTTGACTGAGGAGCAACAGAAGAGCATCCCCATGACCTTGGCAGTCCATATCCGAGCCGCCGAGGCTGCAACAGCGGGGCTTAAGATCACTGAGGTCACCATCCCAGTCAGTAGGGACAACGAGAACGGATCGTTCAGTCAAGTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATGTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTCCGTGCGGACACGTGTGGATGTGAACATGTCTGAACGTGTTGCAGTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTTCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTTCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCTTATGTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCTTATGTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTATCGTATCTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTCCGTGCGGACACGTGTGGATTGTGCAGTGAGATGGCCAAGGGGGTGTCTGCAGTGGTGGACATGACGTGGACTGGCTGGGGACGCACGAGGAAGCTGGCTGACATCCACGGTCTACCGTATCTTCGTGCGGACACGACGATAGGAGGATTTGTGCGAGCCATGGACTCCTATCTTACGGAGAGGGAAGGCACAGATGCAGTACTCATCTTCCAGAACGAGGACGAACTGGATCAAACCCTCTACTACTTGATCGGCAACTCCATCATCCGCGTCATCGTGCTGGACGGTCTCAACTCCGACGCCGCCGAGCGCATCGGCGCCATGCGACCGACGCCGTCGTACTTCGTCATCTTCGCGGCCACCAGCAACATGACGAGGATATTCAATACGGTAAGCGATGTGCACGACCAGCAACATGACGAGGATATTCAATACGGTAAGCGATGTGCACGACCAGCAACATGA
Protein Sequence: VVLVMCGVWVRILGISVPVYPARQPHQLVQPVLFYTQPKTRVQSQHPLIAIDHQYAAIELGSVGTPYLVASASVADPHLAAASHKHGSTVGGKAAKGHLIIADHKSSGEGSSSSSKSSGKHIEEGKRGEEGKERDKNDHSEDGGKKTSHHDSASKGGYHDEHSGGSKGERYKGGGGFNKGGFTKGYRDKYKKNEYTKFDKFWNDGHKKGDFHKFGSEGSSHYGIGKSHKKGGSDKKGAAENAHGKKGGFAKGHDTSDHKGYAGKTGHEEQHSSHAEFSKNKKGVILTEEQQKSIPMTLAVHIRAAEAATAGLKITEVTIPVSRDNENGSFSQVCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYVRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPLAGDARGSWLTSTVYRISVRTRVDVNMSERVAVCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYLRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYLRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYLRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYLRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYVRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYVRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLSYLRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYLRADTCGLCSEMAKGVSAVVDMTWTGWGRTRKLADIHGLPYLRADTTIGGFVRAMDSYLTEREGTDAVLIFQNEDELDQTLYYLIGNSIIRVIVLDGLNSDAAERIGAMRPTPSYFVIFAATSNMTRIFNTVSDVHDQQHDEDIQYGKRCARPAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -