Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4e-08 3.1e-05 24.8 0.0 2 38 19 54 18 59 0.93

2 3 5.3 4.1e+03 -1.2 0.1 2 12 72 82 71 84 0.84

3 3 4.3 3.4e+03 -1.0 0.2 30 45 130 145 124 145 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4e-08	3.1e-05	24.8	0.0	2	38	19	54	18	59	0.93
2	3	5.3	4.1e+03	-1.2	0.1	2	12	72	82	71	84	0.84
3	3	4.3	3.4e+03	-1.0	0.2	30	45	130	145	124	145	0.78

Coding Sequence: ATGCCTCGCAAATACGTTCCGCGGCTTGGGAGTAGGACATACAAAAACTACAATGAAGAGACGTTGGAGAAAGCGCTGAATGAGATTGTCAAGGGGACTCCTGTGAAAGTGGCATCTAAGAAGTACAAGATTCCATACGGCACATTACATAATAGGTTCCATGGTCTGCATGGGAAGTCAGTCGGTACACCAACAAATTTAACTTTAGCTGAGGAGACCGCCATCGTGGAAGCCATCGCCACCTGCTCAGACTGGGGTTTCCCACTAACAGTATTTGATATGCAGATGTTCACCAAATCTTTTCTGGACAGGCAAGggcgtacaatttcacgattcaGGAACAACATTCCTGGTAAAGATTGGGCACAAAGTGTGCTGAAGCGTCACAAGTCCACCTTAAGCCAACGTATGGCGACGAATATTACAAGGTCGCGCGCACAAGTATCAAGAACAATTCTTACTGAATATTACGATAACCTCAAGGCCCATGAAGGCTGCATGGAGAACAGTTCTCACAAGATGGAAGATGTCGAAGCCAAGAGCAGCGGGGAGAAGCCAGCTCTGCGGAAGAAGAGGAAAATGGCAGTACCAGCCGGGCAGAGCATATCTGCTCAGCATAACATGAAGAAGAAGATGTGA
Protein Sequence: MPRKYVPRLGSRTYKNYNEETLEKALNEIVKGTPVKVASKKYKIPYGTLHNRFHGLHGKSVGTPTNLTLAEETAIVEAIATCSDWGFPLTVFDMQMFTKSFLDRQGRTISRFRNNIPGKDWAQSVLKRHKSTLSQRMATNITRSRAQVSRTILTEYYDNLKAHEGCMENSSHKMEDVEAKSSGEKPALRKKRKMAVPAGQSISAQHNMKKKM

Sequence clustering based on sequence similarity using MMseqs2