Lnig017118.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- clz9
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001477.1:15163-17193[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-10 4.9e-07 30.5 0.0 2 38 16 52 15 59 0.84
Sequence Information
- Coding Sequence
- ATGGTGAGGAATTATATTCGGATTACGGAGAGATCAAGTTATGGAGACACTAAACTGCAGGCGGCTATAACAGATGTCGTCGAAAATGGAGTACCTGTCCGCACTGCTGCGAAGAAGCACGGAGTTCCTCGTGGTACTCTGCAGAAACGAATTAAATTTGGGAAGACCAGTGTCTTGAGTATCGGTCGATTTAAGACAGTTTTTAGTGTCGAGCAGGAACTAGAattgaaatatcatattttacatatggAGTCTCTCTTCTACGGTCTAACTTCGTATGACGTCCGTAAAATAGCATACGTGTTCGCCGTGGGCAATAATTGCGCTCATAATTTCAACATCGAAAAGAAGGTCGCGGGAAGGGATTGGTTTTTCGGATTTATAAAACGTCACCATCTTTCGTTACGTAATCCAGAAGCCACCAGCATGGCCCGTGTGGCCGGTTTCCGCAGGGACAAAGTGGTGCGTTTTTACACTTTGTTGAAGGAACTTTTCGACGCCTATCATTTTGATGCTGACCGGGTCTATAATATAGACGAGACTGGCGTTACTATTGTTCAGACGCCCAAAAAAATTGTCGCATTGAAGGGAAGAAAGCAAGTCGGGAGGATTACATCTGCAGAGAGAGGAAAAAACATTACCGTTGTTGGCGCCATCAGTGCTCTCGGTTCGTTCATTTCACCGATGATTATTTTTCCTCGGGTACGGATGAATGATCGTCTTCTGACAGGATGCATTTTTGGGACACTTGGAATTGCCAACCCTTCTGGATGGATTGACTGTGACATTTTCGTGAAATTTATTCACCATTTCATCTCGTGCACGAAACCCTCCAAAGAGAAACCAGTTCTCATTGTTTTGGATGGACATGCAAGTCACAAGTCTTTGGAAGTTGTCCAGCTATGCAGGGACAACAACATCCATTTATTGACCCTCCCTCCACACACTAGTAACAAGATGCAGCCACTGGATCTTACAGTCTACGGACCGTTCAAGACATACTTGAATCAGGAGATGGACACGTGGATGTCGAACCACCATGGCATGAGAATTACTGACTATGACCTAAGTCCAATAATAAAAACAGCATTTTTGAAAGCTGCGCAACCACTGTCCATCCAAAATGGCTTCGACAGGTCAGGGATTTTTCCGTTCAATCCCAATCTGTTCTCTGATGCTGATTTTGCAGCCGCAGACATGTTATCTGTGAATTATGAGGACGCAGGTAATCAGCAAGCAGAAGCAATGGAATTGGAGGCTATAGAATTCGAGGCCACAGCATTGGAGGCCACAGCATTGGAGGTCCCAGCATTGGAGGCCCCAGCATTGGAGGCCACAGCATTAGAGGCCACAGCATTAGAGGCCTCAGAATTGGAGGCCGTAGAATTGGAGGCCTTAGAATTTGGCAGTGATATTGTTCCTGCAGAAAACCCCATTCTGCTGACTGATCGAGTACCGGAGGAAGCCGGTTCAGATGAAAACGAAGGCTGTGCTGAGGAAATTGGTGCTGAAGAAGATGGTCCCGCTCAAAATCAAGTTGGTGATTCAGTAGTTGCAAGTACGAGTGCCGCTGTTGTTAAGAAATTGAGTGTGGAGGAAATTTCGCCCATACCTAAGAGTAAGATTGCTGCAAGACCacagaagaaaagaaaacaagaaaagGCTGAAATTATGACCAGCTCGCCAATGAAGCTTGTTCTCGAAGAAAAAATGGTTGCTAAGAAGCTGAAACAAgacaaaattgaagaaaagaaagCCAAGAAAGCTGAAAACGCTAAAATCCCAAAGGCTAAGAAAAAAAAGGACGTGGGAGTTTCAAAGACAGCAGCTAATAAGGCACACACGGCAACGAATCAATCTAAACCTACGTGTGCACTAAATACTGACACGGAAGATGTTGCATGTGCCCTTTGCGAAGAACTTTACTCCGAGACGTCAGCAGAGGAGTGGATAACATGTCCTGGGTGCAAAAAGTGGATGCACGAGGAATGCACGGATGGCACTCAAAACGTTTGCGAGCTTTGCCGATAA
- Protein Sequence
- MVRNYIRITERSSYGDTKLQAAITDVVENGVPVRTAAKKHGVPRGTLQKRIKFGKTSVLSIGRFKTVFSVEQELELKYHILHMESLFYGLTSYDVRKIAYVFAVGNNCAHNFNIEKKVAGRDWFFGFIKRHHLSLRNPEATSMARVAGFRRDKVVRFYTLLKELFDAYHFDADRVYNIDETGVTIVQTPKKIVALKGRKQVGRITSAERGKNITVVGAISALGSFISPMIIFPRVRMNDRLLTGCIFGTLGIANPSGWIDCDIFVKFIHHFISCTKPSKEKPVLIVLDGHASHKSLEVVQLCRDNNIHLLTLPPHTSNKMQPLDLTVYGPFKTYLNQEMDTWMSNHHGMRITDYDLSPIIKTAFLKAAQPLSIQNGFDRSGIFPFNPNLFSDADFAAADMLSVNYEDAGNQQAEAMELEAIEFEATALEATALEVPALEAPALEATALEATALEASELEAVELEALEFGSDIVPAENPILLTDRVPEEAGSDENEGCAEEIGAEEDGPAQNQVGDSVVASTSAAVVKKLSVEEISPIPKSKIAARPQKKRKQEKAEIMTSSPMKLVLEEKMVAKKLKQDKIEEKKAKKAENAKIPKAKKKKDVGVSKTAANKAHTATNQSKPTCALNTDTEDVACALCEELYSETSAEEWITCPGCKKWMHEECTDGTQNVCELCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894689;
- 90% Identity
- iTF_00894689;
- 80% Identity
- -