Lnig016290.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001379.1:156028-157905[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-11 4.3e-08 33.9 0.0 4 34 12 42 9 50 0.89 2 2 8.6 6.7e+03 -1.9 0.1 18 26 524 532 522 532 0.88
Sequence Information
- Coding Sequence
- atgaaagtcaatAAAAAGACTTATAGTCAAGAATGCCTTCAAGGAGCGCTGGACAAGATAAAGAATGGAGCCATGTCAATTCGCGAGGCAGCGAGAAATTATAGTATTCCGTATACTACCCTAAATGATAAGATCACCGGTAAAAGACCAGTAGTGGCAAGGAAAGGTCCCGATCCCTTCCTTACTGGGACCGAAGAAAACACTATTGTGGGATGGCTGCGGGAAATGTGTGAACGGGGTTTCCCACTAATCAGGGATGATCTTTTGGATATTGTCCAAAAGATCATGAAGGATGATGGGCGCCGAAATCCTTTCACAAACGATCGCCCGGGAAAGACCTGGTACACGGCATTCCGTGCCAGGCACCCGATCTTGACAGAGAAACGGGCGGAGGTGATAAGCAAGGGACGCGCTGCTGTGAGCGAAGTGAGGATTCGCGGCTGGTTTGGGAAGCTCGAGTATTTTTTGAAGGAGCAAGGGGATGAAAGCATTCTGACTGACCCAAGCCGGATATTTAATTCCGATCAAAGTGGATTCCTGTTCTTCAAAGCAACAGGTAAATACATTGGTATCCGAAATCAGCCACTCAAGATCCTTGCCAACTCCAAGGAAAAGGAGCAATTGACCGTCCTTGGGACATTTTCTGCCGATGGTCGCTGTCCACCACCTATGGTGATGTACCCATACAAAAGGGTGCCCCCTATTTTGAAGAAGACCTTCCCCGAAGGCTTGGTCATGACTAACACAGACTCAGGGTGGATGAGAGGGCATGCCTTCCTGGACTACATGAAGGCATTCTATGAATGGCTGATCGAGGAAGAGATCACGCTCCCCGTTTTGTTCCTCATCGACGGACATCGCAGCCACCTTGGGTTCGATGTCAGCACGTTTTGCCAGGATCACCAGATACATTTATATTGCCTCTTTCCAAACGCAACACACATCTTGCAGCCAGCTGATGTAGGTGTGTTCGGCCCAGTCAAGACCGCTTGGACAAAGGCTGTGCAAAAACACAAGATTGAAACCATGGGGCAAGCCATCAACAAGCAAAACTTTGCTACACTAATGAAGCCTGTGTGGGATAGTTCGGTTACGGCCACAAACATCATGTCGGCATTTCGTAAATGTGGGATTTATCCCTTCAGCCCGGATGCTGTGGACTATAGAAAATGCATAGTCGACAAGTTACACACTCTGGAAGAAGCTCAAGCAAATGCCGTCGAGACAGGCGAATATCTCAAACTGCTTGAGAAGAAGCAGGATTTGGAAGAGTTCCTGGGGCCTGCTGTAACAGAGGCGTACGAAAGTATAGTTCCTGACGCCGACGATGAAGATGGCGATCGTACCCTCTACAGCTACTGGTTACATCTGAAGAACAGATGTCTGCAGGCACTTGCAGCAACCAGTGTGCCAGAAGTTGTCGAGGGTGAGATTGATGACGAAGTACGAGCTGAAGAGGACGTAGAAGGTGAGGAGGATGTCGACGGGGATGTATTCTCATTTGAATTTCCGGAATTCAACGATGCCGTTCCCATCTGCCCATCCATGTCCATCCCATCTCCCGAAGCTAGTACTAGCAGAGCCGCCAATGAACATGTTCGAGATGAAACACTTCCTGGACCAAGCGGAATAACTCCATCGACGTCGTTCTGTTCATACTCGTCATCAGCCAGTTCCGACAGTATATCTCCTTCCCTCGGCAAATTCTTAATTTTACCATCTAAGAACGTGACTGCGAGGAAAAGGAAGGAAACATTCATAAACTATGCTCCTTCATCTCAGCAGAGCCTGGATGAAATGGCGGAAAAAATGAAACCAAAACCGCCCAAGATGCGCAAGAAAAAAGTTTCCAAAAATGAGTGGGTGTGCATTTATTGA
- Protein Sequence
- MKVNKKTYSQECLQGALDKIKNGAMSIREAARNYSIPYTTLNDKITGKRPVVARKGPDPFLTGTEENTIVGWLREMCERGFPLIRDDLLDIVQKIMKDDGRRNPFTNDRPGKTWYTAFRARHPILTEKRAEVISKGRAAVSEVRIRGWFGKLEYFLKEQGDESILTDPSRIFNSDQSGFLFFKATGKYIGIRNQPLKILANSKEKEQLTVLGTFSADGRCPPPMVMYPYKRVPPILKKTFPEGLVMTNTDSGWMRGHAFLDYMKAFYEWLIEEEITLPVLFLIDGHRSHLGFDVSTFCQDHQIHLYCLFPNATHILQPADVGVFGPVKTAWTKAVQKHKIETMGQAINKQNFATLMKPVWDSSVTATNIMSAFRKCGIYPFSPDAVDYRKCIVDKLHTLEEAQANAVETGEYLKLLEKKQDLEEFLGPAVTEAYESIVPDADDEDGDRTLYSYWLHLKNRCLQALAATSVPEVVEGEIDDEVRAEEDVEGEEDVDGDVFSFEFPEFNDAVPICPSMSIPSPEASTSRAANEHVRDETLPGPSGITPSTSFCSYSSSASSDSISPSLGKFLILPSKNVTARKRKETFINYAPSSQQSLDEMAEKMKPKPPKMRKKKVSKNEWVCIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -