Lnig039598.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010006113.1:6870-18055[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8 3e+03 -0.8 0.0 13 26 4 17 3 17 0.82 2 3 0.017 13 6.7 0.0 2 38 135 170 134 175 0.92 3 3 1.9e-09 1.5e-06 29.0 0.0 4 35 192 224 192 229 0.92
Sequence Information
- Coding Sequence
- ATGCAGTTGTGGAACAAGTGGATGTCATCTTCGCATGCATCCTCCAGCTTCATTCATCCGCCACCAGAGCGCGGCGTGACATCACTAACATCTCGACTTCGGAAACCCTCCCTGCAAATGTCTCCGATCCATTTCATTCTTTGTTATTCCGTCTCATCTCCATATTCTTGTGATTCACGTCGAGAGTCACTCGTAATGGCTGACGCACTCGACAATGGCGTGCTCAACCTTGCTAAGCTGCTTGAATCTTCTCAAGTCTGGCTTGGCGCCTCCACCTCGTCAATCGCCGAGTACAATGAGAGTAATTCTTATCCTCCTTCTTCTCAATCTTCTCTGGCGAGGCATCCTAGTGCATGGAATAAAGCATTGCAGATGTCGAAGAACGCCAACTCCAAGTGGACTCAAGACGATCTGTTTGCGGCGATCGACCTTGTGAAGCAAGGCACGCCGATCAAACCAGCGGCAGAGAAGTGCCGGATCCCGGTGATGACGTTGTGGCGTCGCACCCGGGCCCTCGGCATGGTCAATTATCCCGCCCTTCTGAAACTGAAAGCACCTACTTGGAGCCAGTTGCAGCTGAAGGAGGCGATCGATGCGGTAGTGACACAGAAGATGCGCTTCACTCAGGCCTCAACGCGATATGGCATCCCAAAGGGGACTCTGTATGATAACATTCTTGGCAAATCCAAGCGTATGGTAGTGTTGGAGGAGGCGGGGCTGACGGGACTCGAGGAGGAGGCGGTCCTCGAGTTCTGTTGCGCCATCTCCATCCAGCCGTACAACCGGCGCACGAAGAAGTCCCTCGATTCCATCCTGCAGTTTGTGGAGAAGCTGCGACGCTCGCGAGACCCCGAGTTCCAGTTCACTGGGCTGGCGGGGTTCCGGTGGTGGTGGGCGTTCTGCAAGAAGCACAGCATCACGTCGCTTTATTTTGATCGCAGCCACAATGCAGACCACACTTTCTAA
- Protein Sequence
- MQLWNKWMSSSHASSSFIHPPPERGVTSLTSRLRKPSLQMSPIHFILCYSVSSPYSCDSRRESLVMADALDNGVLNLAKLLESSQVWLGASTSSIAEYNESNSYPPSSQSSLARHPSAWNKALQMSKNANSKWTQDDLFAAIDLVKQGTPIKPAAEKCRIPVMTLWRRTRALGMVNYPALLKLKAPTWSQLQLKEAIDAVVTQKMRFTQASTRYGIPKGTLYDNILGKSKRMVVLEEAGLTGLEEEAVLEFCCAISIQPYNRRTKKSLDSILQFVEKLRRSRDPEFQFTGLAGFRWWWAFCKKHSITSLYFDRSHNADHTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -