Lnig024324.2
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- bab1
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010002357.1:12028-14655[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.5e-14 5e-11 43.3 0.1 3 45 352 394 350 394 0.92
Sequence Information
- Coding Sequence
- ATGGGCAGCACATCGCAGCAGTATTGCCTGCGCTGGAACAACCACCGCTCCAACCTGCTGACCGTGTTCGATGAGCTGCTGCGCGACGAGGCCTTCTGCGACGTCACGCTCGCGTGCGAGGGGAACACCTCCGTCAAGTGCCACAAGATGGTGCTGGCCGCCTGCTCCTCCTACTTCCAATCCCTCTTCACCGAGCTGCCTTGCCAACATCCCGTCGTCGTGCTCAAAGACGTCAAGTACAGCGAGATGAAAGCCATCCTGGAGTACATGTACAGAGGCGAGGTGAACGTCGCTCAGGACCAGCTAGGTGCCTTGCTGAAAGTAGCCGAGACGCTCAAGGTCAAGGGGTTGGTCGAGGAGAACATGCCGTTTGGGAAAGAGCCGTCCAACGGTCCCGTCCACTCCCCGCCCAGCATCAGTACGTCGACAACGCATCCCTCCCCGCTCCCCCACTCCCCGCCCCACTCCTCGGGGATGCCCCAATTTGAGAAGCATCCCTACAGCCTCTACGGCAAGTCCCCTGCGATGGAGCGGACCCAGGGGGGCCGGATGACCCTCCCCATGTGGGCCATGCCCGGAATGCCGTACCCCCACCACGCAGCCCCCGTGGCCCCTCCGCACGCCACTGCGGCGGCCATGTTGAGCAGCTGCTACGAAGCGGCCAGTGCGGATATGTCGCCGCTGAAGAGGAAGAAGCTGCAGAGTCTGCTGATGAGTCGAGACACCCCGATACTGCGGACCGTGTTGGGGCAAGGGCAGGCGGACTCGTCGCAGCCGATGTCGCTGGTCAGCACACCGGACAGCAGAGAGCGAGTCCACTCCAACGGCTCAGCCAATGACGCAGACAAACAGAGTTTCAAGGCCGAGAACTCGTTGGAGGAAGCGCGATCGCCGTTCACAGACATCTCAGGCATGGACGACGAGACACCGGAGAAGAACAACAAGATGATGGCTCAAACTTTTCCAGGAGATATCAGAGAAGTGTCTTCGGGCATCGCCACGTACGTGCCAACGCAGAAGCCCGAGTGGAAGCGCTACAAGCAATACACGCGCAATGACATCATGTCCGCCATCGAGGCCGTGCGCACCGGCATGAGCGCGCTCCAGGCCGCGCGCAAGTACGGCGTCCCCTCGCGCACTCTCTACGACAAGGTCAAGAAGATGGGAATAACGACGAGTCGTCCGTTCAACAAACGCAGCTCGAACGTGAGTTCCGCTGGCGGATATTTCCCGTACGGCAGCTCGGGGGGTAGCAACTCGATGGGGGGGATGTTTGCGGGCGGCGGGATGTCAGAAGGCGAGGACCAAGCGCATCCCTCGCCCGGTGGTATGATGGAGATGAAACCTCTCTACATCCAACACGCTCTGGACGGGATGAAACGGGAGTTAGGCGAACGAGAGGCGTTGGCGGCTATGGCGGCGGCCGCGGCCAGTCACGCTTCGCACAGCGGAGGGAGTTCGTCAAGTCCGGGGGAGAACGGAAGGTCCTTAAGTCCAACGCCGAGCATGAAGTACATGAGACAAGGAAGCATCACGCCCGACATGCATCACAATGACGAAGACGACGACGACAGGGTCGAGGATCTCTCGGTGACGAGGAAGGCGGACCCGGTGTCGAACGTCAGAGTCATCATGCCGCCGATGAGAGAGAAGAAGGCAGAGGAGTGCATCGGAGAGTCGCGGGCGAGGATAGAAGGAGGCGACCGCGACTGA
- Protein Sequence
- MGSTSQQYCLRWNNHRSNLLTVFDELLRDEAFCDVTLACEGNTSVKCHKMVLAACSSYFQSLFTELPCQHPVVVLKDVKYSEMKAILEYMYRGEVNVAQDQLGALLKVAETLKVKGLVEENMPFGKEPSNGPVHSPPSISTSTTHPSPLPHSPPHSSGMPQFEKHPYSLYGKSPAMERTQGGRMTLPMWAMPGMPYPHHAAPVAPPHATAAAMLSSCYEAASADMSPLKRKKLQSLLMSRDTPILRTVLGQGQADSSQPMSLVSTPDSRERVHSNGSANDADKQSFKAENSLEEARSPFTDISGMDDETPEKNNKMMAQTFPGDIREVSSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKMGITTSRPFNKRSSNVSSAGGYFPYGSSGGSNSMGGMFAGGGMSEGEDQAHPSPGGMMEMKPLYIQHALDGMKRELGEREALAAMAAAAASHASHSGGSSSSPGENGRSLSPTPSMKYMRQGSITPDMHHNDEDDDDRVEDLSVTRKADPVSNVRVIMPPMREKKAEECIGESRARIEGGDRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894932;
- 90% Identity
- iTF_00894932;
- 80% Identity
- iTF_00894932;