Lnig035605.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- bab1
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010004613.1:4882-11927[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-07 0.00059 20.7 0.0 4 36 213 245 210 251 0.91 2 4 3.3e-09 2.5e-06 28.2 0.0 2 39 261 297 260 303 0.86 3 4 0.00017 0.13 13.2 0.0 6 34 320 347 320 358 0.87 4 4 1.6e-10 1.2e-07 32.4 0.2 4 41 378 415 376 417 0.94
Sequence Information
- Coding Sequence
- ATGGACATGTGTACAAAACCAGAGCACTATTGCCTTCAATGGAACAATTACACCACTCACATTACAGACCTATTTGTCCAATTACTTGACACAAATTGTTTGGTTGATGTCGTGCTCTGTGTGGAACACAAAACTATCGTCGCTCATCGAATAATACTTTCAGCTTGCAGCACATTCTTTCAGGAGATTTTTGCCAGTGCTGAAGATCAACATCCTATTGTTATTCTGGGTGATATGAAATACAATGACGTAAAAGCAGTCATTGAGTTCATCTATCGTGGTGAATTAAGTGTTAGCGCAGAACAAGTAAGTTCTGTTCTTCAAGTGGCACGCGAGTTGAAAGTCCGAGGACTGATGGAGGTCAGCGGGCAAGTCTTGGATTTTGATGTCGCGGCTCCTACACCGTGTAGTGTTATAGAAGATGACTGTGAAGACTCTGCTGACATTCAGAGAGATGACTTCGATGAGATGGAAGGTGAAGAGGGTCTGGAGTCAAACATAGTCGATTACCTTATTGAGGATTCAGAAACAGTTGAGGAACTGGTAGGCGCCAAAACAAGTAAACTAGATGTAGATGAAggagaaaaaataattaaacagcGAAGAGATGCCTCAAAAAAAggttatagTGAAGTGATCATGAACGAGGCTCTCGACGACATCCGCTCTGGACGTAGCTTGCAAGAGATCGCCAAGTTTCACAAGATCCCCCGCTCGACATTGTACTTCCGAGCTCGATCGCAGGGTGTGCCCATGTGCAGTTCGCGCCACGGCTATTCTCAAGAGGAGATCAACACTGCTCTGCTTGCAGTCAGAGATGGTTGCAGTCTCCAGCAAGCTGCCCAACAATTTAAAATTCCAAAGACAGTATTATGGCGACAAATCCAGAAAGGAGGCCCAGAGTTTAAATCCATGCTACACAACCGAAGCAAACCTCGCTATGATGCAGTGAAAAAGCAAGCAGCCATAGAGGCAATTGAAAACGGTGGCAGTATTAGCAAAGTTTCATGCCAATATATGATTCCTAAGACAACACTGTTTAACGAGAAAACACGTCTTATAGAAGCCGGCCGTCTGCCGGTGACGAGTATTCGAAAACGAAACCAATCCGGTGACGGATTTAAAACGCAGCGTCTGGCAGAAGCAGTGGCGGCGTGCAAAGGCGGGAGAATGTCACAAGCTGCAGCTTCGCAAGCTTTTAAGGTTTCTAAAACTACTATTTGGCGTCGCTTACGATCAGGAACAGAAGAACCCAAAGACAGCAACAGTATGAACAAAGAAGTAGACTGTGAATTTACTGAACCAATTGAGACTGAAGAGATTCAAGAGACTAAATACGATGACATGATGGTTCGACTTCCATCAGTCAGCGAGTACTCAATAGTTGTGGGAGACAGCTCTGATGTGCCCGTTACTTACATGGATGAATCGGACTTTGCAGACGAATCACTTATAATCTTGGCAAGTGGCAGCGATGAGCCGATCTCCTTACCTGTTGAAGAAAGTCAAATCATCGTAGACTCGGATGGTAACCAAGTCTTGTAG
- Protein Sequence
- MDMCTKPEHYCLQWNNYTTHITDLFVQLLDTNCLVDVVLCVEHKTIVAHRIILSACSTFFQEIFASAEDQHPIVILGDMKYNDVKAVIEFIYRGELSVSAEQVSSVLQVARELKVRGLMEVSGQVLDFDVAAPTPCSVIEDDCEDSADIQRDDFDEMEGEEGLESNIVDYLIEDSETVEELVGAKTSKLDVDEGEKIIKQRRDASKKGYSEVIMNEALDDIRSGRSLQEIAKFHKIPRSTLYFRARSQGVPMCSSRHGYSQEEINTALLAVRDGCSLQQAAQQFKIPKTVLWRQIQKGGPEFKSMLHNRSKPRYDAVKKQAAIEAIENGGSISKVSCQYMIPKTTLFNEKTRLIEAGRLPVTSIRKRNQSGDGFKTQRLAEAVAACKGGRMSQAAASQAFKVSKTTIWRRLRSGTEEPKDSNSMNKEVDCEFTEPIETEEIQETKYDDMMVRLPSVSEYSIVVGDSSDVPVTYMDESDFADESLIILASGSDEPISLPVEESQIIVDSDGNQVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894967;
- 90% Identity
- iTF_00894967;
- 80% Identity
- iTF_00894967;