Lnig019209.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- bab2
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001717.1:389254-403840[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-12 7.1e-09 36.4 0.0 1 41 377 418 377 421 0.91 2 4 5.6e-12 4.4e-09 37.1 0.1 1 39 431 469 431 472 0.95 3 4 1.7e-16 1.3e-13 51.6 0.0 1 45 486 531 486 531 0.97 4 4 1.7e-18 1.3e-15 58.0 0.1 2 43 539 581 538 582 0.96
Sequence Information
- Coding Sequence
- ATGGCTGGCCAGCATTACTGCCTTCGTTGGAATAATTACCAATCCAACATGACATCTGTGTTCCATCATCTTCTTCGAACGGAGGCCTTCGTCGATGTTACTTTGGCTTGCAATGATTTATCGCTTAAAGCTCACAAGGTGGTTTTATCTGCATGTTCTTCGTACTTCCAAAAGCTACTGCTAGAAAACCCGTGCAAGCATCCGACCATAATCATGCCGCAGGATGTCTGCTTCAGTGATCTCAAGTTCATCATCGAGTTTGTGTACCGCGGGGAGATCGATGTCTCGCAAGCGGAACTCCAGTCTCTACTAAAGACTGCCGATCAACTGAAAATCAAAGGATTATGTGAAATGCCAGAAGCCAAAGAAAACTCAGCAATGAATCACTGCGGATCCAACGATCAGGATCCCCACTCGGTACTCTCCAGGCGGACGTTTACGAAGCTTCGTCAGTTATCTGGGTCGAAGAGGCCGCGAGGACCGGACGGAGTTAGAAGGGCCATATTCAATGATGATggAGATGTCGACTTGCCCGACTTTGCTCGAGATCGAGGCTTCAACACTGTGGCAACTTGTACTGAGGAGGACCATTCTGACACACCCGTTGTATTACATGAGCAGAATCATCATCAACACAACCAGCACAACTTTAAAAGACAAGTGGTTGGAAACGGACCTGCGCCGATTACAACTCCGTTGCTAATCTCTCTCGACTCCCACTCCATGACCCATCAAACGAGCAACGAAGTAGACTTGCTCCCTGAACCTCAACCTCTAGCGCCGGCCGCTACCCTGGTGGAGAACCTCGACATCAACGAGTGTTCCGCGCATGATCGGAATCAATTGCAGGAGAACTCCCGCAGTTCGTTGCACACCCAGCGAGAGTTGGAGAACAGCATTGTCAAGGTCAAGTTCGAGACATTGCGGGCGATGGAACAAGCGGATGCGATTGACATCGACGACGACACAGACGATCATGACATGGACGATAGGGTTGATGATGAAGACCACGACCATGCGATGCATACGATGATGGTCACTCCAGAGCTTCTCGGTCTCATGCCCAACTCTTCCATACATTCCGACATGAACGGAGATCCCAGCAAGGCCGGTATTCCGAAGTCATGGACACAAGAGGACATGGAGCTTGCCCTGGACGCGCTCCGCAACCACAACATGAGCCTGACGAAGGCGTCCGCGACGTACGGCATTCCATCGACGACGCTCTGGCAGCGCGCCCACAGGCTCGGCATCACGACGCCCAAGAAGGAGGGGCCGGCCAAGTCGTGGACAGAGGACATTCTGAACACGGCGCTGGATGCGCTCAGGACCGGCACGATATCGGCAAACAAAGCCAGCAAAGCATACGGAATCCCCAGCAGCACGCTCTACAAGATCGCGAGAAGAGAAGGCATCCGATTAGCCGCTCCATTCAACGCAGCCCCCACCACGTGGAGCCCTGATGACCTTGAACGCGCGCTGGAGGCGATCCGCTCTGGCGTGACCACGGTGCAGAGAGCATCCACCGAGTTCGGGATACCGACTGGAACGTTGTACGGGCGGTGCAAGCGAGAAGGCATCGAGCTGTCCCGCAGTAATCCCACACCGTGGTCAGAGGGAGCGATGGGCGAGGCGCTGGAAGCCGTCCGCGTCGGTCAGATGTCCATCAACCAGGCCGCCATACACTACAATCTTCCGTACTCCTCACTTTATGGCAGGTTTAAGAGAGGAAAGTACGAGGCCGAAGGTCACCCGCCCGGCGAGGACATCAACTCGGACACGTCCCCCCCGCCGCAGATCATGGTGGTGCAGTATCAGCACCACAACCAGCTGCAGGCGCAACAGCAGCACGCCACAATGTACGAACAGCACGCCAGTTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHHLLRTEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEMPEAKENSAMNHCGSNDQDPHSVLSRRTFTKLRQLSGSKRPRGPDGVRRAIFNDDGDVDLPDFARDRGFNTVATCTEEDHSDTPVVLHEQNHHQHNQHNFKRQVVGNGPAPITTPLLISLDSHSMTHQTSNEVDLLPEPQPLAPAATLVENLDINECSAHDRNQLQENSRSSLHTQRELENSIVKVKFETLRAMEQADAIDIDDDTDDHDMDDRVDDEDHDHAMHTMMVTPELLGLMPNSSIHSDMNGDPSKAGIPKSWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGITTPKKEGPAKSWTEDILNTALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALEAIRSGVTTVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHPPGEDINSDTSPPPQIMVVQYQHHNQLQAQQQHATMYEQHAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894961;
- 90% Identity
- iTF_00894961;
- 80% Identity
- iTF_00894961;