Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.021 2.2e+02 3.1 0.0 36 55 5 24 2 32 0.86

2 9 0.0037 39 5.5 0.1 21 55 25 59 20 64 0.79

3 9 0.0055 57 5.0 0.1 30 55 69 94 57 98 0.80

4 9 0.0055 57 5.0 0.1 30 55 104 129 92 133 0.80

5 9 0.0053 55 5.0 0.1 30 55 139 164 127 169 0.80

6 9 0.0049 51 5.2 0.1 30 55 174 199 162 208 0.81

7 9 0.011 1.1e+02 4.0 0.1 34 55 213 234 197 239 0.81

8 9 0.0035 37 5.6 0.1 21 55 235 269 230 277 0.79

9 9 0.018 1.9e+02 3.3 0.0 34 55 283 304 267 308 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.021	2.2e+02	3.1	0.0	36	55	5	24	2	32	0.86
2	9	0.0037	39	5.5	0.1	21	55	25	59	20	64	0.79
3	9	0.0055	57	5.0	0.1	30	55	69	94	57	98	0.80
4	9	0.0055	57	5.0	0.1	30	55	104	129	92	133	0.80
5	9	0.0053	55	5.0	0.1	30	55	139	164	127	169	0.80
6	9	0.0049	51	5.2	0.1	30	55	174	199	162	208	0.81
7	9	0.011	1.1e+02	4.0	0.1	34	55	213	234	197	239	0.81
8	9	0.0035	37	5.6	0.1	21	55	235	269	230	277	0.79
9	9	0.018	1.9e+02	3.3	0.0	34	55	283	304	267	308	0.79

Coding Sequence: ATGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGAGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACATGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCATCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAGCGCGCGTGCATACAGCCGATACAACACAGTCACGTGTCACCCAACACCACACGCCACTGCTGCAATATCCTCTCTCGCGCCAAGCGATGGCAAGGCATGCAACAAGTTTGCAAGGTTAGGTCTAGACCCGAGGCGCGAGACGTGAATGACGGCTGA
Protein Sequence: MSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHMSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSSNTTRHCCNILSRAKRWQGMQQRACIQPIQHSHVSPNTTRHCCNILSRAKRWQGMQQVCKVRSRPEARDVNDG

Sequence clustering based on sequence similarity using MMseqs2