Lnig006895.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- retn
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010000545.1:118926-125891[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-20 5.8e-16 59.8 0.0 15 89 173 245 159 245 0.90
Sequence Information
- Coding Sequence
- ATGTTTCTCCAACTAGGCACCCCGACCAACCTCCCCAACGAGAATATTATTGACTCTGTTCCTCCACCTCCACAGGCACCCCGATCAACCTCCCCAACAACAAGAAAATCTGTTTCACAACCTCCCCGATCCTCCCCAACGAGAATGTTATTGACTCTGTTCCTCCACCTCCACAGGCACCCCGATCAACCTCCCCAACAACAAGAAAATCTGTTTCACAACCTCCCCGATCCTCCCCAACGAGAATGCACCCCGATCAACCTCCCCAACGACAAGAAAATCTGTTTCACAATCTCCCCGATCGTCCCCAACGAGAATGTTATTGACTCTGTTCCTCCACCTCCACAGGCACCCCGATCAACCTCCCCAACGACAAGAAAATCTGTTTCACAACCTCCCCGATCGTCCCCAACGAGAATGTTATTGACTCTGTTCCTCCACCTCTACAGGCACGCCGATCAACCTCCCCAACGCGAAGATAATCTGTTTCACAACCTCCCCGATCAACCTCCCCAACGAGAATGCACGCCGATCAACCGACTGCCGATCATGGCGAAGTCCGTGTTGGATCTGTACGAGTTGTACAACCTAGTCATCGCGCGCGGCGGCCTCGTCGACGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGGTTGCATCTCCCGTCGTCCATCACCTCGGCGGCGTTCACACTTCGAACACAATACATGAAGTACTTGTATCCATACGAGTGTGACAAGCGACGGCTGAGCACGCCGGCAGAGCTCCAGGCAGCGATCGACGGCAACCGGCGAGAAGGTCGTCGCAGCAGTTACGGCTCGTACGCGGAGATGGTACAGCGCAGTCCCGTGTCTCAGAACCACCATGCTCAGATGTCTCCCTTGAGTCTGGTGACCGCGGCGCAGCGGCCGATGATGAACGGAAACTCCAACAACCACCATCATGCGCACCCCGGCGCGCACATGCACCCGGCGCAGCATCCAGCGCTCGCTCAGCATATGGCCGGAGTCCCAATGCCCGGCCTGGTGGGCAGTGAGTTTGAAGCACGCATGGTCGAATACGTGAAGCTCCTGAACAAGGAACTCCGAGACGCAAACAACGGCTCGGCATCGCCCCCCTCCCCACCATCACCCCAGGAGGCGGCCTTGAACGCACTGGAAATGAGCCGCCTCACCCTCTGGAACCTCTACAACAACAATGTGACATTGCCGACGCCGCCAAGCGCCGAGCCGCAGAAGGAGGCGCTGAATCTCGGGGTGCGTGAACAGGAGGCGCGACAAGCGAGGCAGGAGGCGATGGTCGTCAAGAGGGAAGCGGAGGAGCAAGCGACGCAGCCCGCCAAGAGGATCATGGCCGACGATGACGGCGGGAGGATGTTGATTGGAGGAACACACATCAAGATTGCCAGCAGAGGTGATGGACGGGGCGGCCAGGACAACAGCTTGGTTGTCAGCATGGACATCAATGGCACGATGTACCAAGGCGTACTCTTCGCTCAGAACACCCGCAAGTCTCGTCTCTCGTGA
- Protein Sequence
- MFLQLGTPTNLPNENIIDSVPPPPQAPRSTSPTTRKSVSQPPRSSPTRMLLTLFLHLHRHPDQPPQQQENLFHNLPDPPQRECTPINLPNDKKICFTISPIVPNENVIDSVPPPPQAPRSTSPTTRKSVSQPPRSSPTRMLLTLFLHLYRHADQPPQREDNLFHNLPDQPPQRECTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRRLSTPAELQAAIDGNRREGRRSSYGSYAEMVQRSPVSQNHHAQMSPLSLVTAAQRPMMNGNSNNHHHAHPGAHMHPAQHPALAQHMAGVPMPGLVGSEFEARMVEYVKLLNKELRDANNGSASPPSPPSPQEAALNALEMSRLTLWNLYNNNVTLPTPPSAEPQKEALNLGVREQEARQARQEAMVVKREAEEQATQPAKRIMADDDGGRMLIGGTHIKIASRGDGRGGQDNSLVVSMDINGTMYQGVLFAQNTRKSRLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -