Basic Information

Insect: Leucozona laternaria
Gene Symbol: ush
Assembly: GCA_932273905.1
Location: CAKNZR010000247.1:266019-278002[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.014 2.5 10.0 0.0 1 20 195 214 195 216 0.90

2 9 0.00027 0.049 15.4 0.8 1 23 266 288 266 288 0.98

3 9 0.029 5.2 9.0 1.0 2 21 313 332 313 333 0.92

4 9 0.048 8.5 8.4 2.9 2 21 702 721 701 722 0.93

5 9 0.02 3.5 9.6 0.1 3 21 762 780 760 781 0.92

6 9 0.8 1.4e+02 4.5 0.1 1 23 826 848 826 848 0.90

7 9 0.014 2.5 10.1 1.3 1 23 854 876 854 876 0.99

8 9 0.00039 0.069 14.9 0.8 1 23 955 978 955 978 0.96

9 9 1.2 2.1e+02 4.0 0.6 2 20 1115 1133 1114 1135 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.014	2.5	10.0	0.0	1	20	195	214	195	216	0.90
2	9	0.00027	0.049	15.4	0.8	1	23	266	288	266	288	0.98
3	9	0.029	5.2	9.0	1.0	2	21	313	332	313	333	0.92
4	9	0.048	8.5	8.4	2.9	2	21	702	721	701	722	0.93
5	9	0.02	3.5	9.6	0.1	3	21	762	780	760	781	0.92
6	9	0.8	1.4e+02	4.5	0.1	1	23	826	848	826	848	0.90
7	9	0.014	2.5	10.1	1.3	1	23	854	876	854	876	0.99
8	9	0.00039	0.069	14.9	0.8	1	23	955	978	955	978	0.96
9	9	1.2	2.1e+02	4.0	0.6	2	20	1115	1133	1114	1135	0.90

Sequence Information

Coding Sequence: ATGGTGCTGGAGATGATTATGATGATGCGAATGATGCTGATGATGTTCCTCGATGATCACCTCTCGAAGTTTTGCCAATTTTCAACTTTTGTTCAGTATAGAGTCGAAACAAAAGATCTAAATCCAAGCGATTTGAATGAGCAAACAGATCCGGTTGCTTCGGCTGACATTGATCAATCAGCCGAGCCAACAACACAAACCCTAATGGAGGAAGAAAATTGTCCGGCCTCGGGTTCGCCTAGAACCCTTTCACCGCCCTCAGAACCAGAAGTTGAAGACCGAAATTCACCTTCAATTCAATCAGATCTCCCTTCTGAAGCGAACTCACCCTCGGAGCCAGACGACTCATCATCAATAGTTCCTGCTGTCGCGGTAACTGCGATTCCTAAACTACGACTGAATGCACTACTAGCTTCTGATCCTGCTCTCAACCCTGATGCGAGAAATCTAAAGATACTTCACGAGGAATCAACGAAGAACCACCATCAGTTAGAGGAAACTTTACCTGCACCTGCCGATCAGAAGCCATCTGTTAAGAGCCAAATTTCAGCGGGTGGGGATAATTCACAGCGTGTTAAAGTTTTTATGTGTCTGCCCTGCGGAATTGGATTCTCGTCGAGATCGACTTTGGAAGCGCATCAAGCTTACTACTGCTCACACAGAAAAGAAGCCGAGGATGATGCGGCAGGTGGTGGTGGAAGTGGGGCTGGTGCTGGGAGCACATCATCGGGAGATAAATCCACCGTCACATCCAGTGGTGAGCCATCAGCAAAATCTATTAAGACTGGCAAGCAGTACGCTTGCACACAGTGCTCCTATAGTGCCGATAAGAAAGTCTCATTAAATCGTCACATGCGAATGCACCAAAGCTCTCCGGCGCCAAGTTCGAACGCCTCCAATGGTGGCGATGATAGTTCTAGTCAACAAGTCGATCGTTACTGCTCTGAATGTGATATTAGATTCTCGAATGTTAAAACGTACCGTGCACATAAGCAACACTATTGTAGTTCCAGGCGCAATGACGGCCAAACAACTCCAAAACTAGCAGAACCAAGTGTTAAAACTACGGGCGGTTCAGTAAGTCCTCCACAGGTGCGAACAAAAACACCAACACCAGCAGCGGTGGCAGCAGCTGCAGCGGCCGCAGCAGCAGCTGCAGTTGCATCACAACCATTTATTGCTTTGCCAACAAATCCCATTCTCATTATTCCATATTACTTAATTCGAACTGCCAGTATGATTCCAGGACCATTAACCTCAGTATCTCCTGGAGTTCCAAATCCTGAAAGCACATGTTTCTCACTTGAAAATGGATCTCTCAAACCAATGGCTACCGCCTTAAGCACTAGCAGCATTACAAATAACCAAATTCCACAAGTGGCAACAACGCCACGAACACATCCTCCACCATTACCAATTACTCCCTCGATTACAGACACAAATGCAGTCACACCTCTATTAACAGAGAAAAATACACGTGCATCGTCTGCAAATAGTTGCAGTGATTCTGTGAAACAAACCAAGAAGGACATGCCCATAAGAGATTTTGCTCCACTTGATCTATCTCTGCGACGTTCTCCCATCCAAAGAGCCCATCGTGTACGTTCGTCATCGAGTTTTATGACACCAATTGACGATAGAATCGACATTGAAACCATGATGGAGGGGAAAGAGAATTTATCAATTGACAGTGGTAGTATAACACCCGAACAAATTGTTTGTGCTCCTTCTCTGCCCAATAGCCCTTCAATGAGCCCATCGCCGAAGAGAAGAGCCCTCAGCCCGAGAAGTAGTAGCGCGGCTTCAATATCACCACTTCCACCATCTGTTATGGATCATTTGCCATTGAGATCTATGCTTCCTGCTGACATTGCCATGAAACTTACTGAGTCCAATATAATTCCTCCGCTAATTGCAAAACAGAATCTAGAACTAGCTTTTAAGTTGTCAACTGCTTCAGCTGCCGCAGCAGCAGCGGCGGCGGCATCAGGTTCGAGCAAACAAAACGATTCCAGCAAGGCACCATCACTCTTAGGAACTCCCCTCAGTTTGGGATCAGCATCTAGTGGACAACCACAGATTTTCGTCAAACAAGGTGTCTCAAAGTGCAAAGAGTGCAATATAGTGTTTTGCAAATATGAGAACTACTTGGCCCACAAACAACATTATTGCTCGGCAAGAAACCAAGAAGATGCCGAAAACAAGACCAGTTGTACTCCTCCATCGGGGTCCAGTGCTGGAGGAGGAATAGATACCAATCCAATTGCATATCAACAGTTGATCTGTGCGGCTTGTGGTATCAAATACACATCAATGGATAATTTAAGGGCCCATCAGAAATTCTATTGTCCCAAAGGAGGTGGTGATGCTGCCTCTGCACCCATAACAAAAGAAAAATGTTCCAAGTGCAAGGTTCTACACGAAATTGGACAACCATGTCCACCAACAGCGGCTACGGCTCAGCCGCAGTGTTCCTACAAATGTCCCGTTTGTGAAGTTGTAAGCTTAACTGCTTCTGAAAGTCGCAAACATTTGGAAACTCATGGCAGTGTCAAGGCATTTCGCTGTTCAATCTGTCGCTATAAGGGCAACACATTGCGTGGCATGAGAACTCATATTCGGATGCATTTCGATAAGAAAACTTCAGACTTTAACGAGGAGAATTACATGTCATGCATATTAGAAGacgatggcttagaaattcctagtcccgtagcaatgagtcaggagcaactatcccaatttgctgcagcacatcaacaacttcagcaacaacaacaacaacaacagcagcagcatttattgcaacagcagccatcgacacaacaacaacaacactccccacagaatcctcaacaGATATTCAACTGTGAAATGTGTAACTACTCGTCTTCCTACAAAGGCAATGTGATGCGTCACATGAAACTGGTACACTCACAACCTGGTACATCGCCATCGATTTCTCCCGAAGTGGTTATCGAAGAAAGTGAGTCATCATCAGCAATTCAAACACTTAACGGAGACAACGGTAGCAGCCTTCCAGGGGGTTTCACCATAAAAACGGAACCCTTAGAGACTATCGCCGTAGCTTCTGCAACCAAAAACAGTAATTCCAATTCCACTGCAAACCACCATCCACATGCTCTACACCATTTGGAACCCCTGACACAAGTCAAATCAGAACCAATGGAAACAGATATTGGTGTAATAAGATCTCTACATTCTCCACTCTCTATTCCTCCACCGCCACTTTTAAATTCAACTTCTCCACTATCAGCGGATGAAAATTCCCTACTGAGAAACAGTACATCATCTGTTGGTGGAATGCCACTAAATCAGAAATATTGTCAAACGTGCGACATACGTTTCAATTATATGAACACCTATTTGGCACATAAACAGTTTTATTGTAAGAATAAACCAAGAGCCGAAACAGATAGTCCAAGTCCAGTGACACCAGTGCAATCTCCAACTATGCTCACTAAAAATAAAGAGAATTTGGAAGCTGCGATGTTATAG
Protein Sequence: MVLEMIMMMRMMLMMFLDDHLSKFCQFSTFVQYRVETKDLNPSDLNEQTDPVASADIDQSAEPTTQTLMEEENCPASGSPRTLSPPSEPEVEDRNSPSIQSDLPSEANSPSEPDDSSSIVPAVAVTAIPKLRLNALLASDPALNPDARNLKILHEESTKNHHQLEETLPAPADQKPSVKSQISAGGDNSQRVKVFMCLPCGIGFSSRSTLEAHQAYYCSHRKEAEDDAAGGGGSGAGAGSTSSGDKSTVTSSGEPSAKSIKTGKQYACTQCSYSADKKVSLNRHMRMHQSSPAPSSNASNGGDDSSSQQVDRYCSECDIRFSNVKTYRAHKQHYCSSRRNDGQTTPKLAEPSVKTTGGSVSPPQVRTKTPTPAAVAAAAAAAAAAAVASQPFIALPTNPILIIPYYLIRTASMIPGPLTSVSPGVPNPESTCFSLENGSLKPMATALSTSSITNNQIPQVATTPRTHPPPLPITPSITDTNAVTPLLTEKNTRASSANSCSDSVKQTKKDMPIRDFAPLDLSLRRSPIQRAHRVRSSSSFMTPIDDRIDIETMMEGKENLSIDSGSITPEQIVCAPSLPNSPSMSPSPKRRALSPRSSSAASISPLPPSVMDHLPLRSMLPADIAMKLTESNIIPPLIAKQNLELAFKLSTASAAAAAAAAASGSSKQNDSSKAPSLLGTPLSLGSASSGQPQIFVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEDAENKTSCTPPSGSSAGGGIDTNPIAYQQLICAACGIKYTSMDNLRAHQKFYCPKGGGDAASAPITKEKCSKCKVLHEIGQPCPPTAATAQPQCSYKCPVCEVVSLTASESRKHLETHGSVKAFRCSICRYKGNTLRGMRTHIRMHFDKKTSDFNEENYMSCILEDDGLEIPSPVAMSQEQLSQFAAAHQQLQQQQQQQQQQHLLQQQPSTQQQQHSPQNPQQIFNCEMCNYSSSYKGNVMRHMKLVHSQPGTSPSISPEVVIEESESSSAIQTLNGDNGSSLPGGFTIKTEPLETIAVASATKNSNSNSTANHHPHALHHLEPLTQVKSEPMETDIGVIRSLHSPLSIPPPPLLNSTSPLSADENSLLRNSTSSVGGMPLNQKYCQTCDIRFNYMNTYLAHKQFYCKNKPRAETDSPSPVTPVQSPTMLTKNKENLEAAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01357492;
90% Identity: iTF_00664445;
80% Identity: -