Llat018973.1
Basic Information
- Insect
- Leucozona laternaria
- Gene Symbol
- -
- Assembly
- GCA_932273905.1
- Location
- CAKNZR010000429.1:475009-483062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.5 6.3e+02 2.5 2.0 2 17 321 334 320 340 0.70 2 15 0.044 7.8 8.5 2.8 1 23 346 369 346 369 0.93 3 15 0.0035 0.63 11.9 0.2 3 23 378 399 376 399 0.93 4 15 0.0015 0.27 13.1 0.1 3 23 407 428 406 428 0.93 5 15 2.8 5.1e+02 2.8 2.1 2 23 436 457 435 457 0.78 6 15 0.00025 0.045 15.5 0.4 1 23 469 491 469 491 0.99 7 15 0.0095 1.7 10.6 1.6 1 23 497 520 497 520 0.96 8 15 0.0084 1.5 10.7 2.9 2 23 531 552 530 552 0.97 9 15 1.1 2e+02 4.1 0.3 1 19 564 582 564 587 0.75 10 15 0.00041 0.074 14.8 3.8 1 23 594 617 594 617 0.96 11 15 0.00011 0.02 16.7 0.6 1 23 623 645 623 645 0.97 12 15 9.9e-07 0.00018 23.1 2.8 3 23 652 672 650 672 0.97 13 15 0.0017 0.3 12.9 2.0 1 23 678 700 678 700 0.97 14 15 0.00075 0.13 14.0 2.1 2 23 706 727 706 727 0.95 15 15 2.7 4.8e+02 2.9 8.1 1 23 732 755 732 755 0.98
Sequence Information
- Coding Sequence
- ATGGAATTTTCCACAATTTGTCGTGTATGCATGCAACCCATTTCCTTGGAGTACATAGATTTAGATACTCCATTCAACGAAACAACCTACTTTGAATGTTTTAACTACTGTACTAAATTGGAAGCAAAATCCAGTGACAAACTTCCAAAGACCATTTGTATTTCGTGTGCGAATTTATTACAGATGGCCTATGATTTTATCAATGCTGCCGCTGAAGCCGATCGTTTGTTCCGCGATTGTTTTAATCAATTGGACGACAGTGATGATGATACCAAATTCATAATTGAAGAAGATGAGATCGTATCAAAGGAAACTATCGTTCTTCCAACTTTTTCTGTACAAAATGAAACACCAAAAAATTATGCTATACACAATAATCAATTAAACTTGGAAGAAAGTGCAGAATCATTTCATGATGAAGAATTACAAGAAGATGCAGTACAATTGCCAAGAAATGCAGAAACACAAAGAGAAGTAAAACGATATAGACATATACTACCGAAAGAAGATACAGAGCTGGTAATATTTAAAGAAGCAAATCACAACGCAGACATCGAAGATACCAGAAAAGACACAGAACTGAGTTTAATTGAACAAACGGAAGTTTCTATTGCAAATGTACCTCCTACATTTGAAATTATCGAAACATTTGAAGTTGAAAAAGAAGAAGATATAGTACAATTGACAAGTAATACAGAACCACAAATCAAAGTAAAAAAATTTACGTATTTACGACCAAAACAAGAAACAGTCCCAAAAATCTTAGTCATTGAAAAAGACACAGCTTCAGATTTGATTGAACCAAATAAGAACCTTGATGAATCTGAATTAGCAACGTTTGAAATTGAGGATAAATTTGACGATACCAAAGATCCGTTTGTAGATACCTCGAGTACAAATCAACAATCGGATGGTCTCGTTAAAGTTTTAACACTCGATCAAGATACCAAAACAAAAATGAAATGCCATATTTGCCAGAAAAAGATTCGCAAAAACTACGGGGATCATATGAACCAGCATACAGGCAACAAAGCATACAAATGTGATAAATGTGATGATTCATTCTTCACCCTTAAACAATTCAAATTACACAAGGCACAAAACCATAAAAAGTTCAGAGATGCCTGGTTTTGCAATAAGTGCGGAGAAGCATTTGAATCCGGAGCTAAACTAAATACACACCAAGATAACGATCATAGCAATAAAACTTCCGGCTTTTGTTTAACCTGCGGTGGATCTTTTTCTGACCAAGATGCCCTAGAACAGCATGTAAAAGATGAACACTGGTCAAGGAGATGCCCAGTTGAATGCACCCATTGCAAAAAGAAATACCAGTTGCATACTTTACCAATGCATGTTCAATATGCACATTCAGACGTGATTCATGCTTCGGAAAATAAAGAATTTACTTGTAAATATTGTTTCGTAAATTACGAAGATGCAACGGAGTTGGAGGAACATATTAAAACACATAAAGGGAAAAACAATTACACATGTGCAACTTGCGGAAAGGATTTCAAAGGTAAACGAGTTTTCGATAAACATAAATCTACGATGCATCCAGAAGCAAATGTAAACCCGGCCAATAGCAAATGTAACAAATGTGACTTTACTACAAACGACTTGCGCTTACTAGTGAAACACAAAAAAAAACATTATACGTATCCGCCGAACGTACGAAGTGCCAAATATCTCTGTGCATACTGCCCTAAGAGATTTTTCGCCATAAAACCTCTCAATGATCATGAAGATTATCAACATGGCGAGAAAAAAAGTGCGCATGTATGTGATTTGTGCGATAAAAAGTTTTACAGTAACTTTAAACTACAAACGCATAAAAAAAGTGCACATGGAAATGATCGTCCATTCATGTGTAAGGAATGTCCCAAAGCATTTAAACTTAAACCACAACTTCTTCAACATGAAAAAAATCATTATGGCAGAAAAATTAATTGTCCGCATTGTGATAAAACATTTGTACAACCATGTTACCTGAGAGTACACCTCAGAACCCATACGAATGAGTTGCCGTTTGAGTGTCATTTGTGTGACAAAAAGTTTGCCATAAAAGTTAGATTGACATATCATTTGGCAAAACATGAGGGTATTGTACGCAAGTGCGAACATTGCCCAAAGTCATTTGATAATATGGCAAAATTGAGAATACATAGGTTTGAGCACATAGGATATCCATACGTATGTGATCATTGCAAAGAAAATCATCACAAAAGAGAAAGCTTTGTCCGTCATATGAGAAGATATCACGGAATTATTATGACCGAAGCAGATGTTGAAGAAAACCGCTTACGAAACATGAAAAACTTCTACAGAAAAACTAAAGTGAAAACTGAGCCCGACTTAGAAATGTAA
- Protein Sequence
- MEFSTICRVCMQPISLEYIDLDTPFNETTYFECFNYCTKLEAKSSDKLPKTICISCANLLQMAYDFINAAAEADRLFRDCFNQLDDSDDDTKFIIEEDEIVSKETIVLPTFSVQNETPKNYAIHNNQLNLEESAESFHDEELQEDAVQLPRNAETQREVKRYRHILPKEDTELVIFKEANHNADIEDTRKDTELSLIEQTEVSIANVPPTFEIIETFEVEKEEDIVQLTSNTEPQIKVKKFTYLRPKQETVPKILVIEKDTASDLIEPNKNLDESELATFEIEDKFDDTKDPFVDTSSTNQQSDGLVKVLTLDQDTKTKMKCHICQKKIRKNYGDHMNQHTGNKAYKCDKCDDSFFTLKQFKLHKAQNHKKFRDAWFCNKCGEAFESGAKLNTHQDNDHSNKTSGFCLTCGGSFSDQDALEQHVKDEHWSRRCPVECTHCKKKYQLHTLPMHVQYAHSDVIHASENKEFTCKYCFVNYEDATELEEHIKTHKGKNNYTCATCGKDFKGKRVFDKHKSTMHPEANVNPANSKCNKCDFTTNDLRLLVKHKKKHYTYPPNVRSAKYLCAYCPKRFFAIKPLNDHEDYQHGEKKSAHVCDLCDKKFYSNFKLQTHKKSAHGNDRPFMCKECPKAFKLKPQLLQHEKNHYGRKINCPHCDKTFVQPCYLRVHLRTHTNELPFECHLCDKKFAIKVRLTYHLAKHEGIVRKCEHCPKSFDNMAKLRIHRFEHIGYPYVCDHCKENHHKRESFVRHMRRYHGIIMTEADVEENRLRNMKNFYRKTKVKTEPDLEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -