Basic Information

Insect: Leucozona laternaria
Gene Symbol: Sry-delta
Assembly: GCA_932273905.1
Location: CAKNZR010000799.1:53701-54861[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.3e-05 0.0023 19.6 0.5 1 23 163 185 163 185 0.97

2 7 0.00047 0.084 14.7 0.0 2 23 190 211 189 211 0.97

3 7 0.0001 0.018 16.8 4.8 2 23 218 239 218 239 0.96

4 7 0.0015 0.28 13.1 0.7 1 23 245 267 245 267 0.95

5 7 5.9e-05 0.011 17.5 5.5 2 23 275 296 274 296 0.96

6 7 6e-08 1.1e-05 26.9 0.5 1 23 303 325 303 325 0.98

7 7 0.044 7.9 8.5 0.1 1 23 349 372 349 372 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.3e-05	0.0023	19.6	0.5	1	23	163	185	163	185	0.97
2	7	0.00047	0.084	14.7	0.0	2	23	190	211	189	211	0.97
3	7	0.0001	0.018	16.8	4.8	2	23	218	239	218	239	0.96
4	7	0.0015	0.28	13.1	0.7	1	23	245	267	245	267	0.95
5	7	5.9e-05	0.011	17.5	5.5	2	23	275	296	274	296	0.96
6	7	6e-08	1.1e-05	26.9	0.5	1	23	303	325	303	325	0.98
7	7	0.044	7.9	8.5	0.1	1	23	349	372	349	372	0.90

Sequence Information

Coding Sequence: ATGGGATCTAAGGAATTTCCAACAATCTTAATAAGGTGCATATTATGTTGCCGCTTAGAAGACTCAAGTAATGGATTCCTCGAAATCAATAGAAAACAAATGCCTAACTCTAAAAAAACGGTCAAATCGGTTCTGATACATTTGAACAAGTGCATTAAAAAGGATTACAATTTTGATTTCTACTCTTGTGTTTGCAGTTCATGCTTTGACAAACTAGCCAAGTACGACGAAATAATGGTTCAACTATTAACTTCTCAGAAGGAACTTGGGCATATGTTGGAAGAATCAATGCATATATTAACGGCACAAGAAATTGATAAGGAATCTGTTGATGATAGTGTTAACTATAAAATTGAGCTGGTAACCGAAGAACATGACAATGAAACCGAATCTTTCAAGGAAGAAGGTGCTAGTGTATCTAGCTTAAATAGTGATGAGGGTGAGGCCAGTGAAAATGATTGGAGTCAAGAATCTACAAAGCTTTCGTTTGCGTGTAATATTTGTGAAAACATGTTCAAATCAAACAGAGCCCTACAAATTCATCTTAAAACTCATGCTAAGTTTGTTTCGTGCTCAATTTGTGGAGCCGCTAGGAAAGATGAAGAATACCTAGAGCTACACATGAACACCCACGAAGGCAAGACTGAAAACGAGTGCCGATATTGCCCAAAAAAATATAGCCGCCGTTCTCACGTTATTCGACACATGCACCTTCACTGGGACAAGAAAAAATTCCAATGCGAAAAGTGTGGCGTACGCTTTTCACAGGCGAACATTCTTTATAATCATAAAATGAACCATGAAGCTGAGGAAGAACCTTTAATTTGTAGTATTTGTCATCAATCGTTTAAGTCGAAGAGAACTATGAAGCATCATATGATCACACATCAAGAAGATCGCCCAATGTATCCTTGTGAGATATGCGGCAAAGTATTTACACAAAAGTACACCATAAAGGCTCACCTTAAAACCCACATTGATGGCTTCGCAGCCTATCCAAATTCAACTAGAAAAACTAAAGCTTCAAAGAAAGATCCAACACAATTTGCTTGCATCATATGTGATAAAGTTATGGGAACAAAAGAAACTTTAGAAGTACATATGTCCCAGGAACATGATGTAATTTCTAGACTGGAGGAAAATCTATATATACCTACATAA
Protein Sequence: MGSKEFPTILIRCILCCRLEDSSNGFLEINRKQMPNSKKTVKSVLIHLNKCIKKDYNFDFYSCVCSSCFDKLAKYDEIMVQLLTSQKELGHMLEESMHILTAQEIDKESVDDSVNYKIELVTEEHDNETESFKEEGASVSSLNSDEGEASENDWSQESTKLSFACNICENMFKSNRALQIHLKTHAKFVSCSICGAARKDEEYLELHMNTHEGKTENECRYCPKKYSRRSHVIRHMHLHWDKKKFQCEKCGVRFSQANILYNHKMNHEAEEEPLICSICHQSFKSKRTMKHHMITHQEDRPMYPCEICGKVFTQKYTIKAHLKTHIDGFAAYPNSTRKTKASKKDPTQFACIICDKVMGTKETLEVHMSQEHDVISRLEENLYIPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00664362;
90% Identity: -
80% Identity: -