Basic Information

Insect: Leucozona laternaria
Gene Symbol: -
Assembly: GCA_932273905.1
Location: CAKNZR010000429.1:435413-439336[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.001 0.18 13.6 0.3 2 23 8 29 7 29 0.95

2 9 4.3e-05 0.0078 17.9 5.0 1 23 34 57 34 57 0.98

3 9 0.032 5.7 8.9 1.3 8 23 102 117 101 117 0.94

4 9 2.7e-06 0.00049 21.7 0.3 1 23 126 148 126 148 0.98

5 9 0.00043 0.077 14.8 0.9 1 23 155 177 155 177 0.98

6 9 1.3e-05 0.0023 19.6 3.5 1 23 182 204 182 204 0.98

7 9 5.4e-06 0.00097 20.8 1.4 1 23 210 232 210 232 0.99

8 9 0.047 8.3 8.4 1.5 2 19 238 255 237 259 0.78

9 9 5.1e-05 0.0092 17.7 2.0 1 23 264 287 264 287 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.001	0.18	13.6	0.3	2	23	8	29	7	29	0.95
2	9	4.3e-05	0.0078	17.9	5.0	1	23	34	57	34	57	0.98
3	9	0.032	5.7	8.9	1.3	8	23	102	117	101	117	0.94
4	9	2.7e-06	0.00049	21.7	0.3	1	23	126	148	126	148	0.98
5	9	0.00043	0.077	14.8	0.9	1	23	155	177	155	177	0.98
6	9	1.3e-05	0.0023	19.6	3.5	1	23	182	204	182	204	0.98
7	9	5.4e-06	0.00097	20.8	1.4	1	23	210	232	210	232	0.99
8	9	0.047	8.3	8.4	1.5	2	19	238	255	237	259	0.78
9	9	5.1e-05	0.0092	17.7	2.0	1	23	264	287	264	287	0.96

Sequence Information

Coding Sequence: ATGCATTTAGGTTGGAAGATTAAATGCAAAGTATGTGGAAAACTTTTCGCCACTAGGGCGGCATACTCGGATCATGCATTCAAACACAGTGAAATGCCCTACAAATGTTTACATTGTACAAAAGGCTACCCTAGGAAATCAAAACTAAGGTATCATCTAAAAACAACTCATGCTATGGATTTGACTATGGACGAAATAAACAAAATATATATTAAAGCACCAAAAGTTCGAAAGAATCGGGAAACAGTAGAATGGATCAAAGTTGATTCCAATGAGACGGATGCAACTGTTTCAGTTGATACTCAAACTTTCGCTCGTATACATAGTTTAAATGCCCACATGAAAACTCACGAAAATGTGGACAAAAAAGAGTCCTACCCTTGCGATATTTGCGGTAAAAGTTTTTCTTCACGCCCAACAGCAAAGTCCCACAGAAAAATCCATGATGAATCTCGTCCCACGTATCAATGTGTTGATTGTGGCAAGATATACCTTTCGAAAGAATGGCTACGCTACCATCGAAGGTTCCATACAGGAAAGGCATTTAAGTGTGTCCAATGTCCAAAGATGTTCATTCACAAATCTGATTATAAAATTCATCTGCGATTTCATACAAACGAATTTCCATATCAATGCGAAATATGCAAAAAGAATTTTGCATTGGAAGGTCATTTAACTGTTCACCTAAAAAAGCATTTAGGTTGGAAGATTAAATGCAAAGTATGTGGGAAACTTTTTTCTACCCGACAAGCACACAGCGATCATGCATTCAAACACAGTGAAATGCCCTTTAAATGTTTGCACTGTACAAAGGGTTACCCTAGGAAAGCAAAACTAAGGGCTCATCTAAAAGCAACTCATTCGATGGATATGACTATGGACGAGATAAATAAAATATATATTAAAGAGCCAACAGTTTCAAAGAGACAGAAAGTAGAATGGATCAAAGTTGATTCTAATGAAATGGATGCAACTGTTTCAGTTGGTTAA
Protein Sequence: MHLGWKIKCKVCGKLFATRAAYSDHAFKHSEMPYKCLHCTKGYPRKSKLRYHLKTTHAMDLTMDEINKIYIKAPKVRKNRETVEWIKVDSNETDATVSVDTQTFARIHSLNAHMKTHENVDKKESYPCDICGKSFSSRPTAKSHRKIHDESRPTYQCVDCGKIYLSKEWLRYHRRFHTGKAFKCVQCPKMFIHKSDYKIHLRFHTNEFPYQCEICKKNFALEGHLTVHLKKHLGWKIKCKVCGKLFSTRQAHSDHAFKHSEMPFKCLHCTKGYPRKAKLRAHLKATHSMDMTMDEINKIYIKEPTVSKRQKVEWIKVDSNEMDATVSVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -