Llat037895.1
Basic Information
- Insect
- Leucozona laternaria
- Gene Symbol
- -
- Assembly
- GCA_932273905.1
- Location
- CAKNZR010001227.1:26789-33376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6e-05 0.0065 18.2 2.1 2 23 208 230 207 230 0.92 2 12 0.063 11 8.0 0.1 3 23 240 263 238 263 0.90 3 12 0.028 5.1 9.1 0.1 1 23 274 296 274 296 0.95 4 12 0.0085 1.5 10.7 3.3 1 22 303 324 303 327 0.89 5 12 0.00029 0.051 15.4 0.8 1 23 331 353 331 353 0.97 6 12 0.0016 0.29 13.0 0.3 1 23 359 382 359 382 0.97 7 12 0.00032 0.057 15.2 2.7 2 23 572 593 571 593 0.97 8 12 2.8e-05 0.0049 18.5 0.6 1 23 599 622 599 622 0.95 9 12 0.0054 0.96 11.3 0.1 1 23 630 655 630 655 0.94 10 12 2.7e-05 0.0049 18.6 0.4 1 23 666 688 666 688 0.96 11 12 5.5e-05 0.0099 17.6 3.4 1 23 695 717 695 717 0.98 12 12 0.0012 0.21 13.4 0.2 1 23 723 745 723 745 0.96
Sequence Information
- Coding Sequence
- ATGGAACAATTCCAGCATCTTCAAGATTTAAATATTTACTCATCCTGCAGGACATGTCTTGAAAATCTAAATGAAATGGAAATGCATTATGAAATATTCGCAATACCAGAACTGCCAGCGAAATTGACAGCATGCTCATTGTTGTCTGTGGAACCAGGAGATGGACTGCCAACAAGTTTATGCGAATCGTGCCATACCACGATTAATAATTTTTATAACTTTCAACAAATGTGCATCTCCGCTAGGGCACGATTTCAGGACTACATAAATTCAGAGAGAAAACCATGCTTAATGGAATTTTCTTCTTATCCAAACAATCCAATGGATTTCATGACTTTTACGGTATGTAAGATAGAAACCGAAGAGAAAGACCATATGTCCCCTGATCTAGATTCAAAACTCAATGAGGCAGAGCCTTCATTTAAAATGCAGAACCAAATTGAAAGTTCATCAAACAACGAAGCGGAAGAGTTAGAAGCATGTCAATCACCATACGATGAATATGAAATAAACATTAAAGACACTTCCAGTATCGATAGCAGCAGAATAAATGAGTATGAAGGAAACCTAAATGATGTGGTATGTTACAAGTCAAATGCTTCTCTAAATAAAATGAACCTCGAATGCAATATATGCAAGAAGTGTTTCAAGAAAAAAGAAACTCTTGAGGTGCACATAGAAGACAAACACGAGAGAAAGTCTTATGAAAATATACCATGCACTGAGCTGGGTTGCGACAAAATATTGTTCAGTAAACAAACTCTCCGCCAACACATCAGTGATATACACTGTAAAAATGAAAGGAAAGCCAAGCAACATTATATCTGTGAAGAATGTGGACAAATTCAGACAAGCTTAGACGCTCTCAAAAACCATCGCTACCTACACACTAGTCAGCAACTGCCGCACGAGTGTCCACAATGCAACAAACGGTTCATAACCAAAAATATACTGAAGGAACACGTTAAATCCTGGTGCCATACCAGGAATTACATTTGTCCGCATTGTGGGGCGAAGAAAACCACATGGACGGACTTGAAAACACACATCAACTCTCACACTAAAGAAAAAAAGTATCCTTGTGAGTTCTGTGGTCTGGTTTATTATAGTTTACAAAACGTTTATCGACACAAGCGCATTGTTCACGAGGGTATCAAGGACTTTCCCTGTTCGACATGTCTTGAAAATCAAAGTGAAATGGATATTCACCATGATATATTCGCAGTACCAGATCTCCAAAAGAAATTGACTGCATGCTCATTATTGGCTGTGGAACCAGAAGATGGACTTCCAACAACTTTATGTACATTATGTCATACAAAGATTGATGATTTTTATAACTTTCAACAAATGTGTATATCCGCTACGAAACGATTTAAAGACTATTTAAGTTTAGAGAAAAAGCCATTTTTAATGGAATTCGCCATAGATCCATGCAATTCTCCTTCGGATCTGCTTATGTTTATGGAAGCCAAAAAAGAAACCGAAGAGGATGATCCTATATCTCTAGATCAATATTCAGAACATGTAAAAAAAGAGCCTTCAGTTTGTGTGGAGGACCAAAATGAGTCCTCATCAAATGACGAAGCAGAAGATATGAATGTTAATGAAAATTCCAGTTGCGGTAGCAGTAGTATTAAAGAAACTGAAGGGACCAACGATGATATGACTTGTCAAAAGAAGACATATACTTCTTTGACTAAAACGAATTTAGAATGTGAAATTTGTAAGAAATGCTTTAAGAAAACCGAAAGATTTGATGCGCATATGCGGGTACATCAAGGGCTTAAGGAATTTCCCTGCCAGCTGTGTGACAAATCATATGCACGTCGAAGTCGACTCAAACTGCACATAAAAGCCAATCACGAGGATAAACCTAAGGAAAAATTCCCCTGCACTGAGCCAGGTTGTGATAGAATAATGTCCACTAAACAAACTCTCCGGCAACACATCAGGGATATACACTGGAACAATGGGTATAAATCGATGCAACCCTACATTTGTGAAGAATGTGGAAAAGTTTTGACAAGTTTATCCACGCTTAAGAACCATCGCTACCTACACACTGGTCAGCAACTCCCTCACGAGTGTCCACAATGCCAGAAACGATACATGACGAAAAACAAACTTCAAGTACACATGAACCGACACGCTGGCATCAGGAACTACATCTGTCCACAGTGCGGTGCTAAGAAAGTAACACAAAACGAATTGCAAAAACACATTAACTCTCACACAAAAGAAAAGAAGTATCCATGTCAGTTCTGTGATATGATTTTACTTTTCTTGTTATTTTATGATGATGATGATGATTGTTGA
- Protein Sequence
- MEQFQHLQDLNIYSSCRTCLENLNEMEMHYEIFAIPELPAKLTACSLLSVEPGDGLPTSLCESCHTTINNFYNFQQMCISARARFQDYINSERKPCLMEFSSYPNNPMDFMTFTVCKIETEEKDHMSPDLDSKLNEAEPSFKMQNQIESSSNNEAEELEACQSPYDEYEINIKDTSSIDSSRINEYEGNLNDVVCYKSNASLNKMNLECNICKKCFKKKETLEVHIEDKHERKSYENIPCTELGCDKILFSKQTLRQHISDIHCKNERKAKQHYICEECGQIQTSLDALKNHRYLHTSQQLPHECPQCNKRFITKNILKEHVKSWCHTRNYICPHCGAKKTTWTDLKTHINSHTKEKKYPCEFCGLVYYSLQNVYRHKRIVHEGIKDFPCSTCLENQSEMDIHHDIFAVPDLQKKLTACSLLAVEPEDGLPTTLCTLCHTKIDDFYNFQQMCISATKRFKDYLSLEKKPFLMEFAIDPCNSPSDLLMFMEAKKETEEDDPISLDQYSEHVKKEPSVCVEDQNESSSNDEAEDMNVNENSSCGSSSIKETEGTNDDMTCQKKTYTSLTKTNLECEICKKCFKKTERFDAHMRVHQGLKEFPCQLCDKSYARRSRLKLHIKANHEDKPKEKFPCTEPGCDRIMSTKQTLRQHIRDIHWNNGYKSMQPYICEECGKVLTSLSTLKNHRYLHTGQQLPHECPQCQKRYMTKNKLQVHMNRHAGIRNYICPQCGAKKVTQNELQKHINSHTKEKKYPCQFCDMILLFLLFYDDDDDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -