Llat023074.1
Basic Information
- Insect
- Leucozona laternaria
- Gene Symbol
- -
- Assembly
- GCA_932273905.1
- Location
- CAKNZR010000538.1:296223-297467[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-18 1.9e-15 57.6 0.0 2 45 263 307 262 307 0.96
Sequence Information
- Coding Sequence
- ATGGCTCTCATTCCTCTACTCCCAGGTCTGCAATGGACGGTCGTTGATTCAAATTATTCCCGATTTTCGCTGCCGTCTTGTCAGCCCAATTtaattggtaatggcaacgcaaacaatccaaacggaggattgagtaatcaatcaaccaataacaacaacccgagcaatactggaaatcagaatacaacggaccatcagcaacaacaacagcaacaacaacaacagcaacagcagcagcaacaacagcaacagcagcaacagcaacaacagcatcgacaacagcagcaaacaaccaacaattcaaatagcaacaactccagtgcaacaagcggactcagccacacccaacaacagccgcagcatggtcatattcaaatgcaCTATACAAACTCCTCGTATTCGCCACAAATAATATCCGTCAATAGTCTGGTGGGCAGCTACTCGCAGAACCTATCGACGCCAACGTCGCCAAATGAGTCGGCAATGGTGCAATCGGTGTACAGTCAGGGACCGACACCAACCCAATCGCCAGTCCATCAGATGAACACAGTTCCCGCGGGGCTGACGACGACAAGCGCCGCAAGTAACGCCGGATCTGTTAGTGGTGCAGGTAATAGTGCAAATGCCAACAACACCGGCAACAGTGGGTCGCTAACCACCACTGTGGTTAACACAGCAGGCAACAGCGGAACAGGTGTAGTCAACAATAGCCAAGTCCAGTCGGGCAACCAAACCACACAAACAACTATAGTAGTTAAGCGTAAGCGCTCTGTAAATCCCCAAGGTGACGAGAACTTTATTCGGGCTCTTGAAGCGGTGCGATCGGGTGGAATTGGGTTTTGCAAGGCCGCTCGTCTTTACGGTGTGAATAACCGAACCCTATGGTTAGAGTACAAGAAGCGAGGGTATCCCATCAGTCGGCCGAGCATAAAGAGTCGGGTAGTCAAGCAGGAGAATCTTTCGCCGTCGCCAACGCCCACCAACGAGGAAACAACGATCGAAAATTACGAGCACATTAACCAGTCAGCTATTAACATGCAAGTTCCTCCCACATCGGATACGCCCACGCCAATAATGTGCACCCCGCACACTCATCCCATGGGTGTGATGGGCTTCCTCGACACCAGGCACATGGACTTCCCGACCAGTATACACACAATGTCTCGACAGCGTTACGTCGATAGCGGTGTAAACGTTAATCCTTCTGCAATGAATCTGCAAAGTATTAACTTTAATTCCATTTAG
- Protein Sequence
- MALIPLLPGLQWTVVDSNYSRFSLPSCQPNLIGNGNANNPNGGLSNQSTNNNNPSNTGNQNTTDHQQQQQQQQQQQQQQQQQQQQQQQQQHRQQQQTTNNSNSNNSSATSGLSHTQQQPQHGHIQMHYTNSSYSPQIISVNSLVGSYSQNLSTPTSPNESAMVQSVYSQGPTPTQSPVHQMNTVPAGLTTTSAASNAGSVSGAGNSANANNTGNSGSLTTTVVNTAGNSGTGVVNNSQVQSGNQTTQTTIVVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRVVKQENLSPSPTPTNEETTIENYEHINQSAINMQVPPTSDTPTPIMCTPHTHPMGVMGFLDTRHMDFPTSIHTMSRQRYVDSGVNVNPSAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356767;
- 90% Identity
- iTF_00693685; iTF_00427045;
- 80% Identity
- -