Basic Information

Insect: Leucophora obtusa
Gene Symbol: RTase
Assembly: GCA_949987735.1
Location: OX465296.1:106023286-106039674[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6 5.5e+04 -3.9 3.0 15 18 346 349 345 353 0.65

2 11 2.1e-10 4.5e-06 28.3 14.5 1 19 359 377 359 377 0.98

3 11 3 6.4e+04 -5.8 14.5 9 18 422 431 413 431 0.92

4 11 1.7 3.6e+04 -3.3 2.6 15 18 432 435 432 436 0.92

5 11 0.0065 1.4e+02 4.4 4.4 1 11 444 453 444 454 0.95

6 11 0.44 9.3e+03 -1.4 0.9 6 10 513 517 512 517 0.90

7 11 6.3e-06 0.13 14.0 2.3 1 12 523 534 523 534 0.97

8 11 3 6.4e+04 -4.1 0.8 5 10 549 554 549 554 0.85

9 11 0.00017 3.6 9.4 13.6 3 19 563 579 562 579 0.94

10 11 3 6.4e+04 -5.4 2.1 9 13 585 589 584 589 0.72

11 11 1.5e-06 0.033 16.0 13.5 1 18 630 649 630 650 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6	5.5e+04	-3.9	3.0	15	18	346	349	345	353	0.65
2	11	2.1e-10	4.5e-06	28.3	14.5	1	19	359	377	359	377	0.98
3	11	3	6.4e+04	-5.8	14.5	9	18	422	431	413	431	0.92
4	11	1.7	3.6e+04	-3.3	2.6	15	18	432	435	432	436	0.92
5	11	0.0065	1.4e+02	4.4	4.4	1	11	444	453	444	454	0.95
6	11	0.44	9.3e+03	-1.4	0.9	6	10	513	517	512	517	0.90
7	11	6.3e-06	0.13	14.0	2.3	1	12	523	534	523	534	0.97
8	11	3	6.4e+04	-4.1	0.8	5	10	549	554	549	554	0.85
9	11	0.00017	3.6	9.4	13.6	3	19	563	579	562	579	0.94
10	11	3	6.4e+04	-5.4	2.1	9	13	585	589	584	589	0.72
11	11	1.5e-06	0.033	16.0	13.5	1	18	630	649	630	650	0.91

Sequence Information

Coding Sequence: ATGATTTCTGTCGATGACCAACTAGCGTTTCTTGAGTATAATATACAGAAGCTCTATGATGAAACAGTCCCTATTAAAACTAGGAATATTACCACAACTAAAAAATCATGGTTCAATATATCTGTCAAAAGGGCTATACAACGTAGAGATTTAGCATACTCTCGGTGGAAGCGTTTTAGAACACCGGAACTAAAAGCCGAATTTCGTTCTGCCAGGAGGGATACTAATAATCAAATTATAATAGCCAAATCTGAGTACTACTCTAAGCGATTTAGTTCAGCGATTGGATCCAAACACACCTGGAAAACTATTAGGGACATAGGTATTGGAAATAGGGATACAAGTATGAACTGCTCTATTGATGTTGATGAACTTAACAACATATTTGCCAACATTCCACTTCCAACAGCAAACAACATATCACACAATGTAAATTCAGATTATATTGAAGTCGCCTTGGAGAAAATTTTACACCGCCAGATAAGTGTTTACGTACATGACAATGAATTGCTGTCTGACAGACAATCAGGTTTTCGACCTAATCATAGCTGTGTAACTGCGCTAATTGATGTATCAGAGAGTATAAGGCGTGATCTGGATGATAGCAAGATTAACTTCTTAGTGCTTCTCGATCACTCTAAGGCTTTTGATACAGTTAACCATCAAATATTATGTACCAAACTAAGGGatcattttaaattttcatcAACATCGGCACAACTTGTATCATCTTACCTCACTGACCGCATTCAATCAGTATGTGTAAACGGCATTAAGTCCAATCCCATAACACTTGCAAGAAGGGTACCTCAGGGATCTATTTTAGGACCACTACTTTTCTCTATTTATGCCAATGATTTGCCACGACATTTATCTCACTGTAGAGTCCAcatgtatgcagatgatgtaCAATTGTATCTCAGTAGTCCAGCTCGATCAATCAGAGAAAACGTTAGCAAACTTAATCATGATTTAAATAACATATATTGTTGGGCATCTGTAAATGGCCTGTGTTTAAATCCACGAAAATCAAACTGTTCACCTTGCGATAAAGTATGCGGTAAGCCGCTATCATGTGGCAAACACAAATGTCAATCGATTTGCCATAAAGGTCCCTGTTATCCATGCCAACAACAGTCACAAATTAATTGCCGATGTggtaaaactaaaaaaagtgTAGCATGTGGAAGAGAACGTACAGCACGAGTGGTATGTTTAGAACCATGTCGAATACCATCAAAATGTCATCATAATAATAGACATCGTTGTCATAAACATGAATGTCCACCGTGTTGTCAACCATGTGGTTTACCTAATGATACTACACAATGTGGTCATCTATGCATGGCTAAATGTCATGCTTCagttaaaataattaaaaaatccAGTGCGGACCCAACTAGTATATGGGAACCAACTAAACAGTTCGAATTAAAATCGATGCCTCATCCTCGCTGTGAACAAAAAGTTGCAGTTACCTGTATTGGTGGTCACGAAGTAGCCGAGTGGCCTTGTTGGAATTCAAAATCCACCTCTTGTCAACGTTTGTGTAATCGTGTATTACTTTGCGGTAACCACAAATGTGCATTCTTCTGTCATTCTGTACAGGATTTAAAAGATATGAAGGAACAACTTGGTTGTCGTAAGTGTGAAGAAGGTTGTAACATACCTCGACCGGAGGGATGTATTCATAACTGTCCTAGACCCTGCCATGTAGCACCATGTAATCCTTGTAGTGTTGCTATTAAAACAAAATGTCATTGTGGATTAATGCCAGTCATTTATAAATGTAGTGATTATTTCAACAAAGAAGGTGACGAAGGTGCAACTTTAGAAAGACAAGAACATTTTAAAAGTTGTGGGAATAGGTGTTTAAAAAATTATCCTTGTGGTCATCGCTGTACTACTAAATGCCATTCTGGTCCCTGTCCATATCCGGAATCTTGTCGCAAAAAGTTACGTATCTTTTGCCATTGTAAACGTTTAAAATCGGAAATTTCTTGTGATAAACATCGGTCTGGCCTTATTAAATTGGAATGCGATAACAATTGTGTTGAGACTCAAACCAAAATGGAACAGGCACGTAAAAAGGAAGAGGAATTGTTAAGGAAACAAGAAGAAGAACGCAATCGTTTAGAAGTAGAGCaatttgaaaagaaatttaGTAAACGTAAGCCCAAAGAACGTAAAACTTTAGATGTTCAACATAAAAATCCCATTAATTGGAAATTAGTTGGTTTGTATGCTGGAATTTTCGGAGCTGTTGTATTAGCTGTAGCTTTAGCTTTTTATGAAGAACATTAA
Protein Sequence: MISVDDQLAFLEYNIQKLYDETVPIKTRNITTTKKSWFNISVKRAIQRRDLAYSRWKRFRTPELKAEFRSARRDTNNQIIIAKSEYYSKRFSSAIGSKHTWKTIRDIGIGNRDTSMNCSIDVDELNNIFANIPLPTANNISHNVNSDYIEVALEKILHRQISVYVHDNELLSDRQSGFRPNHSCVTALIDVSESIRRDLDDSKINFLVLLDHSKAFDTVNHQILCTKLRDHFKFSSTSAQLVSSYLTDRIQSVCVNGIKSNPITLARRVPQGSILGPLLFSIYANDLPRHLSHCRVHMYADDVQLYLSSPARSIRENVSKLNHDLNNIYCWASVNGLCLNPRKSNCSPCDKVCGKPLSCGKHKCQSICHKGPCYPCQQQSQINCRCGKTKKSVACGRERTARVVCLEPCRIPSKCHHNNRHRCHKHECPPCCQPCGLPNDTTQCGHLCMAKCHASVKIIKKSSADPTSIWEPTKQFELKSMPHPRCEQKVAVTCIGGHEVAEWPCWNSKSTSCQRLCNRVLLCGNHKCAFFCHSVQDLKDMKEQLGCRKCEEGCNIPRPEGCIHNCPRPCHVAPCNPCSVAIKTKCHCGLMPVIYKCSDYFNKEGDEGATLERQEHFKSCGNRCLKNYPCGHRCTTKCHSGPCPYPESCRKKLRIFCHCKRLKSEISCDKHRSGLIKLECDNNCVETQTKMEQARKKEEELLRKQEEERNRLEVEQFEKKFSKRKPKERKTLDVQHKNPINWKLVGLYAGIFGAVVLAVALAFYEEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -