Lobt046646.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465298.1:160463668-160466628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0053 0.57 12.5 1.2 2 23 194 216 193 216 0.95 2 14 0.2 21 7.6 0.8 3 23 237 257 235 257 0.95 3 14 0.42 45 6.5 0.6 1 23 266 289 266 289 0.96 4 14 3.5 3.7e+02 3.6 1.2 1 13 389 401 389 405 0.76 5 14 7.1 7.5e+02 2.7 4.9 2 21 420 439 420 440 0.90 6 14 0.0058 0.62 12.4 2.8 1 23 479 502 479 502 0.96 7 14 7.1 7.5e+02 2.7 0.4 1 10 551 560 551 564 0.82 8 14 0.0087 0.92 11.8 0.1 3 23 592 613 590 613 0.93 9 14 0.84 89 5.6 4.2 1 23 657 678 657 678 0.87 10 14 0.02 2.1 10.7 0.1 1 23 726 749 726 749 0.92 11 14 4.7 5e+02 3.2 1.9 1 23 795 818 795 818 0.96 12 14 0.0046 0.49 12.7 0.6 1 23 824 847 824 847 0.95 13 14 0.16 17 7.9 0.3 2 23 856 877 855 877 0.96 14 14 0.2 21 7.5 0.1 1 23 884 906 884 906 0.96
Sequence Information
- Coding Sequence
- ATGATTAAAATAAAGTTGCAAACCATTGATGATGATATCACAAAAAACGACTTGGACGAACAAAAGGCATATAATATAACCATGGAAATTAAGCAAGAGCCGGAATTAATGCTAGAGTCTGAATTAAAATGGTTTCCTACAAAGCTGGAAGATGAGCAACAAGAATACTACCAACAGTATCCGTTCGTTGATAGTGACGAAGAATGCGGTAAATTTGTACTACCCTCAATAAAATACGATGAGACTGAATATGAAGAATATTCTATTAAATACATTGACGAAGGGGACAAGTTAAGTGATGAAGATGATGGAAATAGTAATCAAAGGTATGATAAGGAAGATTTTGATTATATTGGTGATAATTATGATAAAGACAGTGATGATGATAGCGATGAAAGTGAAAACTTTAACGTGGATATGGATACTAACAGTTATATGGAACTGACGAAAAACCTTGATATAAATCAAGAAACTGAAGACACATTAAGAGATTTGGATGACATAGCTAGTGGCAGtacaaaaccaatttaccaGCAAAGTTCTTTTTTAAACTGGCTGTGTTCTAATTACCTCCAATGTGTATGTCCAGTATGTGAAGATACATTTGAAAGTAATAAATATTTGAATTCACATATAAACAAGCAacataaaaatgaaattgaTGATACCAAATCTTCCAATTATTTTACAAACACATCTCAAACCATTTGCAAACACTGCCAAAAACCTCTTAAAAACGATGTCGCGCTTTTAATTCATTCCATGAGGCATTCAACAAAAGATACTTTAGAATTGTTCATGTGTAATATATGCAGATTTAAATCCTCACAAATTGTTCTTATACAAAGACATATAATAAAAACACATCCTGATATAGTAGAGttatttgaaaatcttaaaatacaacaaaaagaaGAACTACATAAATGTCCTTTATGTCCGGCAATCTATGAAAGCAGACATTGTTTACGTTTTCATTTTGTAGATAATCATCCAAAGGAGCATAACGAAATATTTACATTTCCATGCCATTTATGTCAAAATAATTTCCAACAATTTGACGATGTTCAGGATTTTTTGAAACATCTTTTGGAGGAACATAATTTAAAGGAttacaaattaattaattttaaaatatttgctgaaaatactgatatgcaaaattttttctgcactaaatgttttaaaatatttaccaaaatggatttaatgaaatttgtaaGACATTATTTAGAACACGATAGCAATAGTTTTAGGTCTTGTAAAACTTGCCATAGGAGATTTTCACTCAAATATCGTAATTGGTATCATATGTGTAGCAAATTGTTTAACATGTATCAAGCTCGCGCAGAGAAAACTATTGTAGATGTATATTCTTCAAGCAGAGAAATAAAGGAGTTAACTAATTGGAAAGAATTTGAAGACCATATGAAACACGTTTGTCCATTTTGTAATAAAGGATTTGAAAAATTACATGATTGGCAAATGCATTTAAGGAATACTCATCGTTTAGATACTCTTAAAGGTCTGAAAATGAAACAAATCGCCGAAGATACAAATAAGTTACAATGTAATATATGTTCTACTTTAGTTATTAATAAATCGGTAGACTTGCACACTCATTGTTTCCAGCATTTACCCTTTAAACCCTATAAATGTAAGCATTGTTCATTAACATTAGCTAACTATAAAATAGCCTTGTCTCATGTCTTAAACAAATGTCAAGTTGGAAAAAATCATTCAAATACTTTAACAGAATCATTTGAAATAATTTGTCCTTTATGTAACGAAAAAATTTCAAGCAGTGAAAATCTTTTAAAACATTACAGCAACATACataatgattttttaaattattacTCCCAGCAAGAAGATAATTCGCTGTTATGTAATATTTGTGAATTAAAATTACCTGATAATAAAAATCTTTATAGATTTCATGTTCTGCAACATTTTGATCAAAAATCACACAAATGTCTTAAATGTTCTCAATCATTTACACGTTCGATTCTATATAGACATGTAAGATATCATTTTGCTACGCCTATAAATAAAGCAACGAATGGCAATAGTTCGTTAAAAAATTCCCATTTACAAACATTCAATAATTCCAAAACTCAAAAAGTGGAAACGAAGAAATGTGCaatattaaatgaattcagtgaatttaTAACATTTGCCTGTCCCGAATGTAATGAAAGTTTGACTAACCAACAATCGTGGTCGGATCACATAGATGAAAAACATGACTTTTTAAAAGAGCATAATTTAAGTATGAAAGATCCCATTGATGGCTCTTTTAAATGCATACACTGTCAATTAAAAGTTACGGGTCTAAAAGATCGacaaaaacataaattaacCCACATGCCGCACAAATCATTTATATGTGCTATATGTTTTCACCGATGTAATAGTTTGGGCGTTTTATATGGACATCTAAGAAGAGTACATTTTGCTAAAGGTTCGTATGAATGTCCTATTTGTTCAGAGGTTTGTACAACAAGTTATGAAAGATCAGAGCATATAAAAGCCACTCATGCTAAATCAGAATGGCCAGAAACTATGTGTTTAATATGCTACAAGATAGTAGAATTAAAAAGTAGTATAAAAGAGCATATGCAAACACATGATATAAATCGGCCAAAATTTGAATGTGAATATTGTGGAGTTAAGCTTATTGCTTTGAAAGATTTTAATGCTCATAAAGCTAGACATGAAAAAAAATTGGAAACAAAGAAAAGTAAGGATACCAATAATACGAAAACAtcattaaaaaatgttaaaactGAAAACATAAACTCTAATATAGAAGATGCAAAACAGATGAAAAAGAATACTTCTACTCTAGACACTGTTAATACTAATTTGCTTAAAGAACAGgtaaataaaagaaaatcaaattCAAAGTCTTCTAACAATAAGAAGAAACCTAAAAAGGATACAAAGCAAAAAACTTAG
- Protein Sequence
- MIKIKLQTIDDDITKNDLDEQKAYNITMEIKQEPELMLESELKWFPTKLEDEQQEYYQQYPFVDSDEECGKFVLPSIKYDETEYEEYSIKYIDEGDKLSDEDDGNSNQRYDKEDFDYIGDNYDKDSDDDSDESENFNVDMDTNSYMELTKNLDINQETEDTLRDLDDIASGSTKPIYQQSSFLNWLCSNYLQCVCPVCEDTFESNKYLNSHINKQHKNEIDDTKSSNYFTNTSQTICKHCQKPLKNDVALLIHSMRHSTKDTLELFMCNICRFKSSQIVLIQRHIIKTHPDIVELFENLKIQQKEELHKCPLCPAIYESRHCLRFHFVDNHPKEHNEIFTFPCHLCQNNFQQFDDVQDFLKHLLEEHNLKDYKLINFKIFAENTDMQNFFCTKCFKIFTKMDLMKFVRHYLEHDSNSFRSCKTCHRRFSLKYRNWYHMCSKLFNMYQARAEKTIVDVYSSSREIKELTNWKEFEDHMKHVCPFCNKGFEKLHDWQMHLRNTHRLDTLKGLKMKQIAEDTNKLQCNICSTLVINKSVDLHTHCFQHLPFKPYKCKHCSLTLANYKIALSHVLNKCQVGKNHSNTLTESFEIICPLCNEKISSSENLLKHYSNIHNDFLNYYSQQEDNSLLCNICELKLPDNKNLYRFHVLQHFDQKSHKCLKCSQSFTRSILYRHVRYHFATPINKATNGNSSLKNSHLQTFNNSKTQKVETKKCAILNEFSEFITFACPECNESLTNQQSWSDHIDEKHDFLKEHNLSMKDPIDGSFKCIHCQLKVTGLKDRQKHKLTHMPHKSFICAICFHRCNSLGVLYGHLRRVHFAKGSYECPICSEVCTTSYERSEHIKATHAKSEWPETMCLICYKIVELKSSIKEHMQTHDINRPKFECEYCGVKLIALKDFNAHKARHEKKLETKKSKDTNNTKTSLKNVKTENINSNIEDAKQMKKNTSTLDTVNTNLLKEQVNKRKSNSKSSNNKKKPKKDTKQKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -