Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465295.1:345148913-345150535[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.33 35 6.9 3.2 1 23 115 138 115 138 0.96

2 9 0.027 2.9 10.3 8.5 1 23 200 223 200 224 0.96

3 9 6.2 6.5e+02 2.9 6.1 1 23 246 269 246 269 0.91

4 9 0.00049 0.052 15.8 2.8 1 23 282 305 282 305 0.96

5 9 0.97 1e+02 5.4 1.1 1 23 373 396 373 396 0.91

6 9 0.37 39 6.7 4.2 1 23 409 432 409 432 0.93

7 9 0.0021 0.22 13.8 1.7 1 23 450 473 450 473 0.97

8 9 0.0059 0.62 12.4 0.5 1 23 482 505 482 505 0.97

9 9 0.0023 0.24 13.7 0.1 1 23 511 535 511 535 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.33	35	6.9	3.2	1	23	115	138	115	138	0.96
2	9	0.027	2.9	10.3	8.5	1	23	200	223	200	224	0.96
3	9	6.2	6.5e+02	2.9	6.1	1	23	246	269	246	269	0.91
4	9	0.00049	0.052	15.8	2.8	1	23	282	305	282	305	0.96
5	9	0.97	1e+02	5.4	1.1	1	23	373	396	373	396	0.91
6	9	0.37	39	6.7	4.2	1	23	409	432	409	432	0.93
7	9	0.0021	0.22	13.8	1.7	1	23	450	473	450	473	0.97
8	9	0.0059	0.62	12.4	0.5	1	23	482	505	482	505	0.97
9	9	0.0023	0.24	13.7	0.1	1	23	511	535	511	535	0.96

Sequence Information

Coding Sequence: atggAAGAGATACGAATAGAAAATGAGGTTGCCAGGTATCATGTAACAATAATAAACGATATCAAAACAGAAGAAATTGAGATTAAGGAAGAATTTATAGAGGAACACCAAATTATGGAGGTAAATGATGACGAAAACACAGCTCAAATGGAAAATGAGGTTATTAGCAGATTAACCCAAAAAGTAAAGCAAAGAGTAGTAGAGTTGCCATTCAAATGCGGCCAATGTGCCTATAGCGCtataaacacaaacattttATTACAACATCAGAAAGAGATACATGCCCTTAGAGAGCCCATAGAAGAAGTAGAAGAAAAACCTACAGTCTCAAAAAAAGTTCCATTTAAATGTAATATTTGCGGtcatcaattattaacccaaAATTCTCTATATCAACATCGTCTTCGTAAACATCCTGAAAGTACTGCAAAAGCAAAAAGACTTGTAAACAAAAAAGATCCCCTAGTTAAGGAAACTATTGcagaaaataaacaaataattgCAAATTATATGGAAACTGAAGAAATGCACAACGAAAATGAAGTAATAAGTGCTCCGACCACACAAATTATTTCAGCAATACCCAAAAAAACATCGTTTGTATGTAAACTATGTGGAAAAAGTTTTCTCCACAAAAACTCATTATGCCAGCATCGACTTCGAAAACATCATCAAGTTATAGatatagtaaaaaaatatgaagCTGAAAAAGATAGATTTAATAAGCTCAAACCATTCAAATGTGAACTCTGTGAACATAGATCTAAAACTGAGAACGCTTTATATCACCATCACTTTGAAAATCATTACGTTCGAAAATCTTCCGATTCAAATAAATCTCCATTTATATGTAAACATTGTGGTTATAGCTTAACTACCAGATATGCTTTATCGCAGCATTATATTAGAAAACATCCTGAAAAGGAGAGAAATAATGCCAATACACAAGAAACAACGCAGGATCAAAATCCAAGTACAGATACATTAGAAAAATCTCAGAAAAAAGTAGATAATACAAATAGTGCAAACAACACCAGCATcaataaagataataaaaacGAAAGTAAGTTTATAAGTGATGATAATGATGTGATGAGAGTACATAAAGGACCACCATTTCTATGTAATCAGTGTAATTATAAATCTCTTACTAAAGCAGCTTTAAATCAACATCGTTATCGAATACATAGTCAACATAATTCAATGAGTTTAAAAACTCGACAATTTAGATGTGAACTATGCTATCATAGCTTCTTAACCCAACATTCTCTAATAGCACATTACGATCAAAAACATGATGGAAACCCACCACCTGCATCAGCAACTTCCAGTTTTGAAAACAAACCATATACGTGTGATTACTGTGGTTATAAATTACCAACAAATATGGCCTTAATTCAACATCGTCATCGTAAACATCGTAATAATAAATTGATCTTTCCATTTGAATGTCCTCTATGTACTAAAGGTTTTCGTGCGGTGACATTTTTGAAAACTCACGTCGAAACAAAACACGAAAATAAGAAACTATTTATATGTGAAAATCGAAAATGTGGTAAAATATATGAGACAGTGGAGTTATTACAACAACATTTATTAGTTCATAAGGATAAAATGCTATAA
Protein Sequence: MEEIRIENEVARYHVTIINDIKTEEIEIKEEFIEEHQIMEVNDDENTAQMENEVISRLTQKVKQRVVELPFKCGQCAYSAINTNILLQHQKEIHALREPIEEVEEKPTVSKKVPFKCNICGHQLLTQNSLYQHRLRKHPESTAKAKRLVNKKDPLVKETIAENKQIIANYMETEEMHNENEVISAPTTQIISAIPKKTSFVCKLCGKSFLHKNSLCQHRLRKHHQVIDIVKKYEAEKDRFNKLKPFKCELCEHRSKTENALYHHHFENHYVRKSSDSNKSPFICKHCGYSLTTRYALSQHYIRKHPEKERNNANTQETTQDQNPSTDTLEKSQKKVDNTNSANNTSINKDNKNESKFISDDNDVMRVHKGPPFLCNQCNYKSLTKAALNQHRYRIHSQHNSMSLKTRQFRCELCYHSFLTQHSLIAHYDQKHDGNPPPASATSSFENKPYTCDYCGYKLPTNMALIQHRHRKHRNNKLIFPFECPLCTKGFRAVTFLKTHVETKHENKKLFICENRKCGKIYETVELLQQHLLVHKDKML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -