Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465299.1:187931153-187940515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00081 0.086 15.1 1.0 1 23 119 141 119 141 0.98

2 14 1.1e-05 0.0012 20.9 0.6 3 23 390 410 388 410 0.97

3 14 6.3 6.7e+02 2.8 0.5 1 23 461 484 461 484 0.93

4 14 7.7 8.1e+02 2.6 2.8 2 23 541 562 540 562 0.93

5 14 0.0035 0.37 13.1 5.9 2 23 732 753 731 753 0.96

6 14 0.27 28 7.2 3.2 1 23 759 782 759 782 0.96

7 14 0.085 9 8.7 0.2 1 23 819 842 819 842 0.97

8 14 0.00086 0.091 15.0 0.8 1 23 856 879 856 879 0.96

9 14 1.9 2e+02 4.5 5.3 1 20 1038 1057 1038 1059 0.94

10 14 0.15 16 7.9 8.7 1 23 1074 1096 1074 1096 0.98

11 14 0.00064 0.068 15.4 2.5 1 23 1101 1123 1101 1123 0.98

12 14 0.00043 0.045 15.9 5.5 1 23 1129 1152 1129 1152 0.94

13 14 0.097 10 8.5 0.7 3 20 1159 1178 1157 1181 0.89

14 14 7 7.4e+02 2.7 4.9 1 20 1187 1206 1187 1210 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00081	0.086	15.1	1.0	1	23	119	141	119	141	0.98
2	14	1.1e-05	0.0012	20.9	0.6	3	23	390	410	388	410	0.97
3	14	6.3	6.7e+02	2.8	0.5	1	23	461	484	461	484	0.93
4	14	7.7	8.1e+02	2.6	2.8	2	23	541	562	540	562	0.93
5	14	0.0035	0.37	13.1	5.9	2	23	732	753	731	753	0.96
6	14	0.27	28	7.2	3.2	1	23	759	782	759	782	0.96
7	14	0.085	9	8.7	0.2	1	23	819	842	819	842	0.97
8	14	0.00086	0.091	15.0	0.8	1	23	856	879	856	879	0.96
9	14	1.9	2e+02	4.5	5.3	1	20	1038	1057	1038	1059	0.94
10	14	0.15	16	7.9	8.7	1	23	1074	1096	1074	1096	0.98
11	14	0.00064	0.068	15.4	2.5	1	23	1101	1123	1101	1123	0.98
12	14	0.00043	0.045	15.9	5.5	1	23	1129	1152	1129	1152	0.94
13	14	0.097	10	8.5	0.7	3	20	1159	1178	1157	1181	0.89
14	14	7	7.4e+02	2.7	4.9	1	20	1187	1206	1187	1210	0.89

Sequence Information

Coding Sequence: ATGGCCGGGAAGAAATGCATACAGGATTACACCATGGTGTGTCGAACATGTTTGGAGTCGAATGTGGAAATGCTAAGTTTAAGCGCGCTAGTCAGTGATAATTTACAACAGGAAGATTGCAAAATTTCCTATTTGGATTGCTTAAGGTCATGTATACAACTAGAGGAAATTGAGGAAGAGATGCCGGCTAGAATATGTTTAGAATGTGCATCAGCCTTGCAGGTGGCCTATTGGTTTATGAAAAACGCAAGCCAAGCCCAggagttgttaaaaattaaattgagAGAGATACGCcataaacaacaacaacgaGAAATCGAGGTTTCTGAGGAGGAAATGAGAAAACCAAAAAGATATCGATGTAAAATTTGCAATGTTAAGGTTGAAACTAAGAGATCACTGAAGGAACATATTAAACTACATTTAGATATTATTGTTTATAATTGTCAATTATGTACCTTCGAAAGTCATAAACGAAATTATTTAGCTGAACACTATATTCAAATGCATTGTGTAGAAGCGTCTAATGAACAATTGaaaccaaaaacaaaaacttcAATCTCCTCATCCGCTTCTCCACCTACTATCACCAAAACGCAAAATTATATGATGGGCGCTATTAATAATGAACATTTCCAGGTATTACCTGAAGTTAATCAACCACAGTTGACttttatggatacttttaaAAATCAACTTTTGGCAAATACAAATTCTTGCTATAGTAAGCCTCTGGAGGAGGCTACCGTTTTAGCAACTGGTAATAATCAACAAAATTTCAATACAATATCCCAATTTGACTCGGTTGAAAGTGATTTAACCGCAGTTTCAAATGATCTTAGTATAGGCAATGAATTCATTGTTATGGCTGATGGTAGTGTTGAAGAAGTTATGGGTAAAGGCGTTGTTATTGAATATATTAATGCTGGAAACGGAAGTGGGGTAACTTTAGACAATGGTAGTTTAGTTCTAGACAATATAATACAGGTCCAAAATACCAATAATACTAATATGTTAGATACAGCAAACAATATTATACAAATGGATGTTGATGATTTGATAATTGAAGACCCAGTTAATACACCAGAAGAAACACAAGATCTCTCTCCGATTGTGGACAAAAACATGCAAACGGTAACAGTTATAGAACCGcccaaaaaaattatttgtaaaatttgCACCAAAGATTTCACCACACAAGAACCATTAAAAAAACATATGCTAACGCACAATGAAATTCCTCATTTCTTTTGTGATCAATGTACATTTTATACATTCTTTAAAATTGATCTTCATCAACATTATAAAAGTAAACATAATCTACATCCAACAAGTAAACAATTACAACcaaaaaataagcaaaaaccTTTAAAACAAGTTTATCCTTGCGATTTATGTTTATATGAAGCTGATTTTAAGTTAGATTTAAAAAGACattatttaaataaacataaattaGATGCAAAGGAAGTTAATTTTAAACCAACATTTGTGGAAAGTCTAAGCATTGGTACATCATCGTATGTATCGAAAGCAAAAGCTGCCACAGCAGCTGCACCAATAAAGAATGTTAAAATAAAACCTATAAAACAATCTGCACCGGATTATCCAAAAGGTTTGAATTGTCGGAAATGTCATGAAGTGTTCTATTGGCGTAACAAACTCTATGAGCATTATAAACTACATAACGCCGAAGAGGCAGCTTTAAAACAAGAGAAACAGTTaattaaagttcaaaataaGCCACAATCTCAAAACACAAAACCAACAGCAATACTAACACAAACTCAACAACTACAACAACAGCCAATTATAAGTCAACAATTATTGGAGCAGGCACAAACTACAAATACTTATACCAATATGGATTCTTTGCCACTAACGATGACTTCAAATACCACTATTAATGCTATGGCACCATTAACACCATCCTCCAGTTCAACCTATACTTTACCATCGGATGCTATCCCACAAATTGTAGAAATGGATcaaacaatagaaaataatatggATTTTGATTTTAATGGTGATGCTTTATTTGAAGACTTTGATGACGATGATGTTGACGTAGAAAATGATTCTGATGAAAACGATAGTGAATTTCGTAATGTTTTACTAACATCCGATGATGATTTTGAGGAAATGTTGCAGGAACAAAATAATCCTCATAATGCGGATGCACCAATAGAATCATATTGTACTCATTGTCAAAAGAATTTTATGAGTCAATATCATTTTGAAAATCATATGTTCGTTCATAGAGGGCTGGCTCCTTATCGTTGTGAAATGTGTACAAATTTGTATAATACCAAACGTTGTTTAATACGTCATTATAAAGCGGTACATAAAAAAGTACCCACAAGAGATATGATACAAGCTAAAGGTGATAAAGTGTTTGTAAATACTACTACGccaattgaaaattttaatattgaagaaactaaatCCGTAACGTTTATGTGTGCAAAATGTCCTTATGAATCTACAGATTTAGGCGATATACAATCCCATCTAAAAACTAGTCACAGCCTTAATGAAGAATCCTACATATTAAGAAAACTTCCATTCGAGTGTCCTCGTTGTATACGCTCGTTTGCTACTAAATCAAAATTATTACGTCATTTAGAACGTAATCATAGTTCATCGCCCATAAATAAACATCAAATACAATTTGACACAATACCAAACTCCTTAACATCCACTTCAACAGCTACAATAAGTAATCATGTAAATATGATGAATACAGAAACAAGTGATCTAAACGCAAGTTGCGCATCTGGATACTTTGATATATACAATAAACCACAACAACAGTTCACTGATCCAGCCACAATATACCGGCGAACAAGAAAAGAACTTTCAATTGAAGATGCCGTAGCGCCCAATGTTGTCATGTCCAACTTTCAGGACAACAATAACGGCAACACCAACTCATCAACAGCTGTGGCTTATAATGAAGCCACTAGCAGCACTACCAATcacaacaaaaacaaaacagcTTCTAGCACTAACAAAAACATAGATTTTAAGGAAGAAGATGATGAGGAGGAAGATGAAGAGGATGAAGGGTTATATATAGACATTGAGGGTTATGAAGAAGAACAAGCCTTATTTACTTGCAAAATTTGCCATTCAACCTGCTATAATCTAGAATCCTTCAACAAACATAGTAAAAACACGGAATGCCGTCAATTTAACAAAGACTTTCCTGAGGATAAATTTGAATGTGAAATTTGTCATTGTTATTATAAGTCGATGTATTTATTAAAACATCATTTAAAACGTCACATAGGAAGAAAATTTCGCTGTCCTCAATGTCCCAAGACATTTATAAATTGTATTGAATTAGATAGTCATCAGCATGTTCATAGTGGTGAAAGGCCTCACAAATGCGATATTTGCCCAAAATCGTTTCGTTATATACATCACCTTAAAAGACACAAAGATATTGTACACTTTGGTAAACGGCATCTTTGCACTGAACCAAATTGTAATAGAAAATTTACAACATTAGCACAATTGAAAGGTCATATTTGGAATCATAAGGGTATTGTACCATATAAATGCCAGTTTTGTGTCAGATTATTTAAAAAGAGATTACTCTTACGTAAACACTGTCTAAAGATACATGAAATCAATTTAAGCGAAGAAGAAATGGCAAAAATTTTTCGTAATAGCTTAGGCTATACAAATCCTCATGATTTTACAGTGGCTATTACAAATGGAAAAATGTTGCGTCGTGCTGATTTAGAGACAATGGGTGCTTCTGGTGTTATAAAATCAtcatttaaataa
Protein Sequence: MAGKKCIQDYTMVCRTCLESNVEMLSLSALVSDNLQQEDCKISYLDCLRSCIQLEEIEEEMPARICLECASALQVAYWFMKNASQAQELLKIKLREIRHKQQQREIEVSEEEMRKPKRYRCKICNVKVETKRSLKEHIKLHLDIIVYNCQLCTFESHKRNYLAEHYIQMHCVEASNEQLKPKTKTSISSSASPPTITKTQNYMMGAINNEHFQVLPEVNQPQLTFMDTFKNQLLANTNSCYSKPLEEATVLATGNNQQNFNTISQFDSVESDLTAVSNDLSIGNEFIVMADGSVEEVMGKGVVIEYINAGNGSGVTLDNGSLVLDNIIQVQNTNNTNMLDTANNIIQMDVDDLIIEDPVNTPEETQDLSPIVDKNMQTVTVIEPPKKIICKICTKDFTTQEPLKKHMLTHNEIPHFFCDQCTFYTFFKIDLHQHYKSKHNLHPTSKQLQPKNKQKPLKQVYPCDLCLYEADFKLDLKRHYLNKHKLDAKEVNFKPTFVESLSIGTSSYVSKAKAATAAAPIKNVKIKPIKQSAPDYPKGLNCRKCHEVFYWRNKLYEHYKLHNAEEAALKQEKQLIKVQNKPQSQNTKPTAILTQTQQLQQQPIISQQLLEQAQTTNTYTNMDSLPLTMTSNTTINAMAPLTPSSSSTYTLPSDAIPQIVEMDQTIENNMDFDFNGDALFEDFDDDDVDVENDSDENDSEFRNVLLTSDDDFEEMLQEQNNPHNADAPIESYCTHCQKNFMSQYHFENHMFVHRGLAPYRCEMCTNLYNTKRCLIRHYKAVHKKVPTRDMIQAKGDKVFVNTTTPIENFNIEETKSVTFMCAKCPYESTDLGDIQSHLKTSHSLNEESYILRKLPFECPRCIRSFATKSKLLRHLERNHSSSPINKHQIQFDTIPNSLTSTSTATISNHVNMMNTETSDLNASCASGYFDIYNKPQQQFTDPATIYRRTRKELSIEDAVAPNVVMSNFQDNNNGNTNSSTAVAYNEATSSTTNHNKNKTASSTNKNIDFKEEDDEEEDEEDEGLYIDIEGYEEEQALFTCKICHSTCYNLESFNKHSKNTECRQFNKDFPEDKFECEICHCYYKSMYLLKHHLKRHIGRKFRCPQCPKTFINCIELDSHQHVHSGERPHKCDICPKSFRYIHHLKRHKDIVHFGKRHLCTEPNCNRKFTTLAQLKGHIWNHKGIVPYKCQFCVRLFKKRLLLRKHCLKIHEINLSEEEMAKIFRNSLGYTNPHDFTVAITNGKMLRRADLETMGASGVIKSSFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00717229;
90% Identity: -
80% Identity: -