Lobt049946.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- PLAGL2
- Assembly
- GCA_949987735.1
- Location
- OX465299.1:51737476-51748221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.051 5.4 9.4 0.2 6 23 247 264 247 264 0.97 2 12 0.0015 0.16 14.2 2.8 2 23 271 293 270 293 0.96 3 12 0.036 3.9 9.9 0.8 6 23 411 428 411 428 0.98 4 12 0.0028 0.29 13.4 0.9 2 23 435 456 434 456 0.96 5 12 0.56 59 6.1 0.5 6 23 538 555 538 555 0.98 6 12 0.14 15 8.0 3.3 2 23 562 583 561 583 0.97 7 12 0.059 6.2 9.2 6.7 1 23 591 613 591 613 0.95 8 12 0.00025 0.027 16.7 0.6 1 23 621 644 621 644 0.97 9 12 0.0019 0.2 13.9 1.7 1 23 648 671 648 671 0.96 10 12 0.65 69 5.9 3.3 1 23 679 702 679 702 0.93 11 12 0.00061 0.064 15.5 4.1 1 23 708 730 708 730 0.98 12 12 3.5e-05 0.0037 19.4 2.1 1 23 736 759 736 759 0.98
Sequence Information
- Coding Sequence
- ATGGATAGCTGTCTTTTATGTCTTAAATCACCTAATACTGATGTGGAAAGTATACAAGTCAATTCAATAGAATGGAAAGAATTGCAAATACAAAATATAATAGAAAAACATTTTTGGGACATGCAAACTATACAAGTCTCATCATGGCTCTGCTACAAATGCTGGGCACAATTACAAGATTTCCATAAATTCTATATAAGCATAGAGGATGCTCATATTCACCTTGGTACATTTATGACAATTGAAGTATCACAGGAACCGAAATTAAAAGATGAAGTTTTAATAGACGAAACTATGTTACCGAATTTGTTTTCAGAAAGACCAGATTTCATTAGGCCACTATTACGCAAAAGTAAACGGTTACAACAAGCGACAAAGAATGTGGAGGATATGAACGAAACTTCAAAGCTGATTAGGAAAAAGGCATCCAATAAAATAACAAAGACTTTACAAGAAAATGCCACTTTAGAACTAGTTACGAAGCAACTTCAAATTACACACAATGATTCGATAGAAATCAATAATGATGACAATGACGATTCCAATACAGATTTCAATTATGAACTAATAAGGAATAAAAGTTCTGCGAGAACTAGGCCACCAAATCAGGCCTTGGACAAATTTATTTCTGAAAACTTTAATCTGAAATGCGTTCTATGCGACATTCCTATGGAAACTTATCATGCCTTATGTGATCATTTTGAAAGTGAACACCACCAAAAGGGTTATGCTGTTTGCTGTGATAAGAAGTTTATTAGACGATATCTTTTATACGAACATTTAATTCAGCACTTGAATCCAAActatttaaaatgttttaattgtggtaaaacatttaaaaatcgtcaaatttTGAAGGCTCATACCAAGAAACAACATAAAAATCTAGAAAGCAAAAGCGCAAATACTACAAaagaaaaattcattaataaaGAAACTTGTAAACAAGCTGAAATTAAACATAAACATGATACGGAAAATGTCAATGGTGAATGCAATGACGATTCCAATATAGAAAATGAGAATGACGAATTCGATTCCGGTTTCAATAATGAAGTCAATTTCAAGTTAACTTTTAGTAATAATCGACCAGGAAATAAAGTAATGGATACATTTATAGCCGAAAACTATAAACTGACTTGTGCCTTATGCGATATTCCTATGGAAACTTATCGATCTTTATGTGAGCACTTTGAAGGCGAACATAAACAGCGTGGTTATGCCGTGTGTTGTAATAAGAAGTTTATAAGACGCTATCTTCTATACGAGCATTTGAAACAGCACTTAGATCCAAACTATTTAAAATGCTATTATTGTGATAAAGTTTTTGCAAATCGTCAAATTTTGAAGGCTCATAGTCAGAAACATTATAGAATTAAAGAAAATCCAACTGTTTCCACTGAAGATGGTTATTCCAATTCAGATTTCAATAATAAATCCAAAAACAATGGAACCCCTTCTAAAAATAGACCACCACATCATGAAATGGATGAGTTTATTAccgaaaattttaatttaaaatgtgttaTATGCGATATTCCTATGGAAACTTTTCAAATGTTATCTAATCATTTTGAAAGTGAACACCGAGGGCCAGCTTATGCTATGTGTTGTGACAAGAAGTTTTTAAGACGTTATCTTCTCTTCGAACATATAAATCAGCATTTGGATccaaattatttaaaatgtaaTTATTGTGCTAGAATATGCACAAGCCGTAAAATTTTAAAGGATCATCTTAAGACACACGATGTAAATCGAGAAAAGAATCATTGCTGTGAAGTTTGCGGTTTATGTTTTAGTTCTCCCCATGTATTGAGCGCTCACAAAACGAGACATTTATCGGAAGAAGAAAAATTATTTCCATGTTCAAAATGTGGCAAAAAATTTGGCAACGACTTGACGCTTAAAAGTCATATAAAATCCATACATGGTCAATCTTTTAGTTGTGATTTTTGTGGTCTAATATGTGTTAATAAATCTGTCctaaaaaaacatataaatcTAAAGCATTCTGTGGGTGAGCAAGAAGTACACACATGCCCGATATGTTCAAAAACATCAATAAATCGACAAGCACACAACAGACATGTAAAATTGTTCCATCAAACTGAGTACAAGCATAAATGTACACACTGTGATATGGCTTTCAAGATAAAGCTATCATTAAGGCAACATATGGCTACTCATACTGGAATCCCTCTTTATAGTTGTAACTGGTGTCCAAAGAAGTTTAATAAAAGTTCCAATATTTCTAAGCACCGTAGAAAATGGCATCCCAAGGAGTGGGAAGAGGTTTTGCGTAAAAAATATTCTGGAAATTTACCACCTAATTATGAAAGAACCTCTAAGAATATTGATGATGAAGAGCATCTTTAA
- Protein Sequence
- MDSCLLCLKSPNTDVESIQVNSIEWKELQIQNIIEKHFWDMQTIQVSSWLCYKCWAQLQDFHKFYISIEDAHIHLGTFMTIEVSQEPKLKDEVLIDETMLPNLFSERPDFIRPLLRKSKRLQQATKNVEDMNETSKLIRKKASNKITKTLQENATLELVTKQLQITHNDSIEINNDDNDDSNTDFNYELIRNKSSARTRPPNQALDKFISENFNLKCVLCDIPMETYHALCDHFESEHHQKGYAVCCDKKFIRRYLLYEHLIQHLNPNYLKCFNCGKTFKNRQILKAHTKKQHKNLESKSANTTKEKFINKETCKQAEIKHKHDTENVNGECNDDSNIENENDEFDSGFNNEVNFKLTFSNNRPGNKVMDTFIAENYKLTCALCDIPMETYRSLCEHFEGEHKQRGYAVCCNKKFIRRYLLYEHLKQHLDPNYLKCYYCDKVFANRQILKAHSQKHYRIKENPTVSTEDGYSNSDFNNKSKNNGTPSKNRPPHHEMDEFITENFNLKCVICDIPMETFQMLSNHFESEHRGPAYAMCCDKKFLRRYLLFEHINQHLDPNYLKCNYCARICTSRKILKDHLKTHDVNREKNHCCEVCGLCFSSPHVLSAHKTRHLSEEEKLFPCSKCGKKFGNDLTLKSHIKSIHGQSFSCDFCGLICVNKSVLKKHINLKHSVGEQEVHTCPICSKTSINRQAHNRHVKLFHQTEYKHKCTHCDMAFKIKLSLRQHMATHTGIPLYSCNWCPKKFNKSSNISKHRRKWHPKEWEEVLRKKYSGNLPPNYERTSKNIDDEEHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00893212;
- 90% Identity
- -
- 80% Identity
- -