Lobt055174.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- zld
- Assembly
- GCA_949987735.1
- Location
- OX465299.1:153283089-153286682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5 3.7e+02 3.6 2.8 2 23 337 359 336 359 0.90 2 12 0.024 2.5 10.5 0.8 1 23 365 387 365 387 0.93 3 12 0.00033 0.035 16.3 5.1 1 23 394 417 394 417 0.94 4 12 0.001 0.11 14.7 8.5 1 23 423 445 423 445 0.96 5 12 0.34 36 6.8 6.1 2 23 659 681 658 681 0.95 6 12 0.024 2.5 10.5 0.8 1 23 687 709 687 709 0.93 7 12 0.00033 0.035 16.3 5.1 1 23 716 739 716 739 0.94 8 12 0.0005 0.052 15.7 9.1 1 23 745 767 745 767 0.96 9 12 6.9 7.4e+02 2.7 2.0 2 23 978 1000 977 1000 0.90 10 12 0.0059 0.62 12.4 0.9 1 23 1006 1028 1006 1028 0.97 11 12 0.00032 0.033 16.4 6.3 1 23 1035 1058 1035 1058 0.95 12 12 0.00044 0.046 15.9 10.7 1 23 1064 1086 1064 1086 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATCTGGATCCGCAACAGTACCAGGTTCTAGCAGAGGAGCAGGTGGCAGAGTTGGGCCGCCTCTCGAAATTGCAGATGGAGCAGGAGAATCAGCAGCGGGACTTGCAGGAAAGCAGCTTGCATATGAAATCGCTGCAGGGGGAGGAGGATCTAGCGCAGCAGGAGGGGGATCACAATGCGGTACTCCACCACATTCAGCCTCTTCCGAAATCTCAGCTTCAACTGCATTATCAACTGGACTACCATAAGCAGCAAGCGGACATGGAGAGTCACAGCACCACCCCCAGCAGCACTCACAGCAACACGTCAGTCCACTCACCCCATATTATCTCCCACCAACAATACCAGGAGCAAGTGCAACAACAGCAACACCAAATATTGGCACAGGGCATTTATACACTCCCACAAATCCCGTCGCCGCCGCAGCAGCAGCAGCATCATCACAGTATAATGGAGCATCATCCCTACATCAACATGCTGCCTTTGGCTATCAACATGCAGCAGCTGCAGCCGCACCTCATCACCACGGAGCTGCCAGACCCCGtgcaacaacaacaactttTGCAGACTAGTGATGAGAAATTGGTACATGTAATATCTACCGCGTCCCCGGGACCCACTACATGTATACATGAATATATTATTACCGAAGAATCACCCCCAGGAGGAGATTTAGTACCTCAGGAGGAGATTTTGCCTGACCATAACAATCAGGAACAGATCGACACCCTAATCGTATCTCAATCTATGCCTAATCCTTCCACATTAACCTCATCATCACCCAACTCTGCCAGCACAAATTCAGAATATGGAATCAAGAGTAACTACAATTCTGAAAAAGAAGAACAAATACAAGATATTCTCGACAAACAGGAGCCTCAGCTACGACAGACGAATGTAAAATCTAGGGAGTCCACTGCGAGCGCCTATAAACGTAAACGAAATCGTAGTACTTCCAGTTCGATAGGAGCCAATAGCGAAATATTACCCAGTGACCTCATAAAATGTTTACCCTGTAACAAGGAATTCTCCAAAATCTGTTATTTAACACAGCACAACAAAAGTTTTCACTCCGGTGAGTATCCATATCGTTGTTCAAAATGTGGCAAACGTTATCAAACCCAAGAGGTCTATGATATCCATGTTCTACAACACAAAACCATCGATAAGGCCCATAAATGTAAAATATGCCCTAAACAATTTCATCATAAAACTGATCTACGACGTCATATTGAAGCCATACATACGGGCAACAAACAACATTGTTGTGATATTTGTGAAAAGAGTTTTTGTCGCAAAGATCGTTTGCGAAAACATTTGGAGACACACAATCGTCCCCGCatgttaagaaaaaaatccaCACAAATCCCGTTGCCGCCGGAGCAGCAACATCATCACAGTATAATGGAGCATCAGCCCTACATAAACATGCTGCCTTTGGCTATCAACATGCAGCAGCACAGCAATATGCAGCAGCCGCAGCTCATCACCACGGAGCTGTCAGACCCCGTGCAACAGCAACAACTTTTACAGACTAGTGATGAGAAATTGGTACATGTAATATCTACCGCATCCCCGGGACCCACTACATGTATACATGAATATATTATTACTGAAAAATCACCCCCAGGAGGAGATTTAGCACCTCAGGAGGAGATTTTGCCTGACCATAACAATCAGGAACAGATCGACACCCTAATCGTATCTCCATCTATGGCTTATCCTTCCACGTTAACCTCATCATCAACCAACTCTACCAGCATAAATTCAGAATATGAAATCAACATTAAATTCAATTCTGAAGGAGAAAAACAAATACAAGAAATTCTCGACAAACAGGAGGCTCAGCTACGACAGACGAATGTCAAATCTAGGCAGTCCACTGCGAGCGCCAATAAACGTAAACGAAATCGTAGTACTTCCAGTTCGATAGGAGCCAATAGCGAAATATTACCCAGTGGCCGCATAAAATGTTTACACTGTAACAAGGAATTCACCAAAATCTGTTATTTAACACAGCACAACAAAAGTTATCACTCCGGTGACTATCCATATCGTTGTTCAAAATGTGGCAAACGTTATCAAACCCAAGAGGTCTATGATATCCATGTTCTACAACACAAAACCATCGATAAGGCCCATAAATGTAAAATATGCCCTAAACAATTTCATCATAAAACTGATCTACGACGTCATATTGAAGCCATACATACGGGCAACAAACAACATTGTTGTGATATTTGTGAGAAGAGTTTTTGTCGCAAAGATCATTTGCGAATACATTTGGATACACACAATCGTCCCCGCATGTTAAACAAAAAATCCACACAAATCCCGTTGCCGCCGCAGCAGCAACATCATCACAGTATAATGGAGCATCAGCCCTACATAAACATGCTGCCTTTGGCTACCAACATGCAGCAGCACAGCAATATGCAGCAGCTACAGCAGCAGCTCATCACCACGGAGCTGCCAGCCCCCGTGCAAGAGCAACAACTTTTACAGACTAGTGATGAGCATTTGGTACATGTAAAATCTACCGCGTCCCCGGGACCCACTACATGTAtacatgaaaatattattactgAAAAATCACCCCCAGGAGGAGATTTAGTACCTCAGGAGGAGATTTTGTCTGAGCATAACAATCAGGAACATATCGACACCCTAATCGCATCTCAATCTATGGCTTATCCTTCCACATTAAGCTCATCATCAAACAACAATGAATATGAAGTCAACAGTAACTACAATTCTGAAGAAGAGAAACAAATACAAGAAATTCTCGACAAACAGGAGGCTCAGCTACGACAGACGAATGTCAAATCTAGGCAGTCCACTCCGACCGCCAATAAATGTAAACGGAATCCTAGTACTTCCAGTTCGATAGGAGCCAATAGCGAAATATTATCCAGTGGCCGCATAAAATGTTTACCCTGCAACAAGGAATTCATAAAAATCTGTTATTTAACACAGCACAACAAAAGTTATCACTCCGGTGACTATCCATATCGTTGTTCTGAATGTGGCAAACGTTATCAAACCCAAGAGGTCTATGATAACCATGTTCTTAAACACAAAATCATCGATAAGGACCATAAATGTAATATATGCCCTAAACAATTTCATCATAAAACTGATCTACGACGTCATATTAAAGACATACATACGGGCAACAAACCACATTGTTGTGATATTTGTGAGAAGAGGTTTTGTCGCAAAGATCATTTGCGAAGACATTTGGAGACACACAATCGTCCCCGCAAGTTAAGCAAAAAATCCGTAAGAGCTAAAAATACCACAACTACGGTGGGCCAAATTGATCAATCCAAAGATAACTCAATTAACACGCTTAATAATGAACAAAACCTTATTCCTACAATTACCTCGCGATTAATTTTGACACCAGCGTCTCATTTTAATGAAACAATTTCTTTAAGTTCTGCAACCATCTCTACCCCTTCGCCACTATTACAACACCTTGATAATGTGGCTATAGATGGTGGTGCTATGCTAAAACAAGAAATAGATGCATATGATGCCAATGAAATGGATGAAGAAAAACCAGAATATTTAACAATGCAATAG
- Protein Sequence
- MENLDPQQYQVLAEEQVAELGRLSKLQMEQENQQRDLQESSLHMKSLQGEEDLAQQEGDHNAVLHHIQPLPKSQLQLHYQLDYHKQQADMESHSTTPSSTHSNTSVHSPHIISHQQYQEQVQQQQHQILAQGIYTLPQIPSPPQQQQHHHSIMEHHPYINMLPLAINMQQLQPHLITTELPDPVQQQQLLQTSDEKLVHVISTASPGPTTCIHEYIITEESPPGGDLVPQEEILPDHNNQEQIDTLIVSQSMPNPSTLTSSSPNSASTNSEYGIKSNYNSEKEEQIQDILDKQEPQLRQTNVKSRESTASAYKRKRNRSTSSSIGANSEILPSDLIKCLPCNKEFSKICYLTQHNKSFHSGEYPYRCSKCGKRYQTQEVYDIHVLQHKTIDKAHKCKICPKQFHHKTDLRRHIEAIHTGNKQHCCDICEKSFCRKDRLRKHLETHNRPRMLRKKSTQIPLPPEQQHHHSIMEHQPYINMLPLAINMQQHSNMQQPQLITTELSDPVQQQQLLQTSDEKLVHVISTASPGPTTCIHEYIITEKSPPGGDLAPQEEILPDHNNQEQIDTLIVSPSMAYPSTLTSSSTNSTSINSEYEINIKFNSEGEKQIQEILDKQEAQLRQTNVKSRQSTASANKRKRNRSTSSSIGANSEILPSGRIKCLHCNKEFTKICYLTQHNKSYHSGDYPYRCSKCGKRYQTQEVYDIHVLQHKTIDKAHKCKICPKQFHHKTDLRRHIEAIHTGNKQHCCDICEKSFCRKDHLRIHLDTHNRPRMLNKKSTQIPLPPQQQHHHSIMEHQPYINMLPLATNMQQHSNMQQLQQQLITTELPAPVQEQQLLQTSDEHLVHVKSTASPGPTTCIHENIITEKSPPGGDLVPQEEILSEHNNQEHIDTLIASQSMAYPSTLSSSSNNNEYEVNSNYNSEEEKQIQEILDKQEAQLRQTNVKSRQSTPTANKCKRNPSTSSSIGANSEILSSGRIKCLPCNKEFIKICYLTQHNKSYHSGDYPYRCSECGKRYQTQEVYDNHVLKHKIIDKDHKCNICPKQFHHKTDLRRHIKDIHTGNKPHCCDICEKRFCRKDHLRRHLETHNRPRKLSKKSVRAKNTTTTVGQIDQSKDNSINTLNNEQNLIPTITSRLILTPASHFNETISLSSATISTPSPLLQHLDNVAIDGGAMLKQEIDAYDANEMDEEKPEYLTMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -