Basic Information

Insect: Leucophora obtusa
Gene Symbol: grau
Assembly: GCA_949987735.1
Location: OX465299.1:5892472-5900243[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.4 3.6e+02 3.7 0.2 2 23 301 323 300 323 0.90

2 10 2.1 2.2e+02 4.4 0.5 6 23 333 350 333 350 0.98

3 10 0.00021 0.022 16.9 0.6 1 23 356 379 356 379 0.95

4 10 0.00093 0.098 14.9 2.9 1 23 387 410 387 410 0.94

5 10 0.0016 0.17 14.2 1.9 2 23 416 437 415 437 0.95

6 10 0.056 5.9 9.3 0.0 2 23 443 464 442 464 0.95

7 10 4.7 5e+02 3.2 1.8 2 23 473 494 472 494 0.84

8 10 0.019 2 10.8 1.8 1 23 501 524 501 524 0.96

9 10 8.9e-06 0.00094 21.2 0.7 1 23 530 552 530 552 0.99

10 10 2.5e-05 0.0026 19.8 4.7 1 23 558 581 558 581 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.4	3.6e+02	3.7	0.2	2	23	301	323	300	323	0.90
2	10	2.1	2.2e+02	4.4	0.5	6	23	333	350	333	350	0.98
3	10	0.00021	0.022	16.9	0.6	1	23	356	379	356	379	0.95
4	10	0.00093	0.098	14.9	2.9	1	23	387	410	387	410	0.94
5	10	0.0016	0.17	14.2	1.9	2	23	416	437	415	437	0.95
6	10	0.056	5.9	9.3	0.0	2	23	443	464	442	464	0.95
7	10	4.7	5e+02	3.2	1.8	2	23	473	494	472	494	0.84
8	10	0.019	2	10.8	1.8	1	23	501	524	501	524	0.96
9	10	8.9e-06	0.00094	21.2	0.7	1	23	530	552	530	552	0.99
10	10	2.5e-05	0.0026	19.8	4.7	1	23	558	581	558	581	0.98

Sequence Information

Coding Sequence: ATGATTTGTCGTTTGTGCTTAAAAGATTTGGAAGATCTTGTTAATATTTTCAATGAATGTGGTGATGAATTCAATATGGCTGAAATTGTTGGTAAACATTTTTGGTTCGAGCCTCTCAAGGATGACCCTATTTCTACATCGATTTGCAGATCATGTTGGCTAAAGGTGTGTGATTTTCATGAATTCTATGAGATGGTGGAAAATGCTCATCGCCATATGAACGAGCGGTTTATTGTAAAAACGGAAAATGCTAGGACAAAACGCCGTCCCTCTATTAATGACCTTATTAATTATAGCTCTCTGCCGAGTAAACGGGAACCCGATGATGAATTTGATGAATTGGGTGAAGTGCCATTCAATATGTTGATAGAGGATACCACAGATGAACCTGGAAAAACTGTTGCAAAAGCAGCTGCCATAGCTTTAGGTGCAGAAGATTCTCGTGATATACTGTCAAATCATAACTTTAGTCATGATGAATATGAAGATGGTGATGTTGGAAATAGTTCCTTCAATGATGACAAGTTCAGTAGTCACGTTGGTGAAAATGATGATACATTTGATGGAGAAGCGTTTATGAAAAACATATTAACCACGCCCAAAGCCAAAGATTTATCACAAAATGAACCAATTTCTAACGTACCAAAAATGGACAACCGTAGATCTACAAGGAATTCTAAAAGGTTCCAGTTGGAAGAAACAGATCACAATGATAATGAAAAAAGGACGACATGTACTAAAAGAAGACCCGGTCGTCCAAAGAAAAGAGAGGTTTCAATTAAACCGgatttaaatcaaaagaaagCCAAAGATAAAATTAACAAGACGCCGGAAGAACAAGATGCATACAAAGCTAAAATGAAAGAAATAGATGATCAAATTGCTCAATACATGACATTACATTGTGAAGTGTGCAGTTCGGAAGCAGATAATTTTGCTGGCTTAAGAATTCATATGCGAGATGTGCATAAAATTGAGAAAGGATATGCGAAATGTTGCAATAAGAAATTTCTTAAAAGAGCCCTACTTTTAGATCATATACGGCAGCATTTAGATCCAGACTGTTATAGGTGTGAAGAATGTGATCGTGCATTTGCTGACCGTCAATCAATGCGAAACCATTTCTTAGTCAAACATCAAAAGGAAGAGGATAAAGTCTACGAATGTTCTCAGTGCACAAAGAAGTTTGTGAAAAAATATCTACTCGAACAGCATAAAATGTTTACACATCGAGATCGCACAACAACATGTAAAAGCTGTAATAAAAGATTTAGTACCATGGATGAATTAACAGAACATAATAAAGAACATTGCAATTATGGCACAATGTGCGATATATGTGCAAAAGTTATACGAGGACCAGCTGCTTTTAAACGACATCAATTAGAGCATCAAGGCATCACAATCCCCAAAGTACAGTGTGATTTGTGTGGATCGTGGCACAAAGATAAATACGCATTAAATAAGCACAAGAAACGACATATGGAGTCGAAGCAACCACATGTTTGTGATATATGTCATAAGATATCGCCAAGTCGTAGTGCTATGTTGAGCCATAAGCGTTACGTTCATGGCACCGACCGTTCGTATGAGTGTGGTGTTTGTCGAAAAACTTTCAAAAAACCAATTTCATTGAGAGAACATATGACCACCCATACTGGAGAGGTTTTATATAGATGCCCACACTGCCCTAAGACTTTTAATTCCAACGCTAACATGCATTCTCATCGCAAAAAAGTCCATCCAAGAGAATTCGAAGAGACACGTAAGCTACGGAAACAAAATGCGCATTTAATTGACCAACCAGTACCGCCTATATCTGTATTAAGTAATGCAAAAAAAGAAACCCGAGCCTTACTGGTGATTGGTTCCGGAAACGAAGAGTCTCATCATGTTTTAATAACAACTAGTGCAAATGATGAATTTAGTGACGACGACGACGGCAATGATGATGTTACTGatttttcaaaagaaaaaattatagtgtaCAAAAACTACAGCATTAATTAA
Protein Sequence: MICRLCLKDLEDLVNIFNECGDEFNMAEIVGKHFWFEPLKDDPISTSICRSCWLKVCDFHEFYEMVENAHRHMNERFIVKTENARTKRRPSINDLINYSSLPSKREPDDEFDELGEVPFNMLIEDTTDEPGKTVAKAAAIALGAEDSRDILSNHNFSHDEYEDGDVGNSSFNDDKFSSHVGENDDTFDGEAFMKNILTTPKAKDLSQNEPISNVPKMDNRRSTRNSKRFQLEETDHNDNEKRTTCTKRRPGRPKKREVSIKPDLNQKKAKDKINKTPEEQDAYKAKMKEIDDQIAQYMTLHCEVCSSEADNFAGLRIHMRDVHKIEKGYAKCCNKKFLKRALLLDHIRQHLDPDCYRCEECDRAFADRQSMRNHFLVKHQKEEDKVYECSQCTKKFVKKYLLEQHKMFTHRDRTTTCKSCNKRFSTMDELTEHNKEHCNYGTMCDICAKVIRGPAAFKRHQLEHQGITIPKVQCDLCGSWHKDKYALNKHKKRHMESKQPHVCDICHKISPSRSAMLSHKRYVHGTDRSYECGVCRKTFKKPISLREHMTTHTGEVLYRCPHCPKTFNSNANMHSHRKKVHPREFEETRKLRKQNAHLIDQPVPPISVLSNAKKETRALLVIGSGNEESHHVLITTSANDEFSDDDDGNDDVTDFSKEKIIVYKNYSIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00893214;
90% Identity: iTF_00717174;
80% Identity: -