Lobt016686.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465295.1:318832580-318837201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.17 18 7.8 2.3 1 23 402 425 402 426 0.96 2 9 4.7 5e+02 3.2 1.8 2 19 432 449 431 452 0.85 3 9 0.029 3 10.2 2.4 2 23 465 487 464 487 0.92 4 9 3.1e-05 0.0033 19.5 5.1 1 23 496 518 496 518 0.98 5 9 0.00043 0.045 15.9 0.1 1 23 524 546 524 546 0.98 6 9 6.4e-05 0.0068 18.5 3.0 1 23 552 574 552 574 0.99 7 9 0.0011 0.11 14.7 5.3 1 23 580 602 580 602 0.98 8 9 9.2e-06 0.00097 21.2 1.7 1 23 608 630 608 630 0.98 9 9 1.3e-05 0.0014 20.7 1.7 1 23 636 659 636 659 0.97
Sequence Information
- Coding Sequence
- atGGTTGGTTTATGTCGTTTATGTGCTTCTTTTCGTAAAATGGATGGTTTAATCATAATCAATGATCAATGTAACGAAATTTGTCAAAAACTACGTAAGTGCTGTCAGCTTAACATACAACTGCAGGATACTTTACCCAAATCAGTGTGCCAAGAATGTATGGAAAGCTTAAATATGAGCCATAAATTCTTTCTGAAAGTACAAGAGGCTCAGGAAACTTTACAAACACTATTTCCATCAAAGAATACAGAAGAAGATAGAAAAAATGAATCTTGGATTTGTTTGGCTAAAACATTGGCAGCTGCAACAGGACAAAATCGAAAATTTGCTTTAACTGCAAAGGAAGGTGAATTAAACTATCAAGATGATGACAAAACTATAAAAAACGAGTTACAaactaaaaatgaaaaaaatgaagaaaatattCCTGTGGAAAGGGTCAATACAAAACAAATACAAAGTACTATACATTTAGACACAAAAGAAGTTCCAATAGATATTAATGAAACTCAAGATAATGCCACAGTTTCTTTGGAAACTgaagaaaatgtaaaatatCTTGACGATGTTTATAATATGTTAGATATATGTAAAGATGAAATGTGTAATGAGAATGCTTTCGATGTATTGGAAACTATAGAAGTAACTATTGATGAAAGTAAAGAAGTGAAGTTAGAAAATTCTTCTGAAATATTAGAAACTATGATAAAAGTAAACAAAGACAGTGTAGAACAGCAACAGGAGGAAACTATGTATGTTGATAATCAAATGGAATTATATTCGCAAGAGACACAATTTGAAGAAGAACATCTTACCAATGAGATCCTTGATAATGAGGAGTGTGTTTTGGAAATGATTGATCAGGAGCTACGTATTGAAGAACATAATCCGTATATAGAAGTTCAGTCTAAATGGTGCAAAGAATCGGACATAGAAATGCAGTATATAAAAGTAGTGGAAACGGAACAGAATCAGCAGGAAGCAAACGAAGAAATACAACCAGAAACCGATGTTGAAATAATCGAAAATGAAAACCAGGCGGAAATGTCTGATGAAACTTTATCCTCCCCTTCTTCACAAATAAAATCGTGGCAGTCATATCCTTACCTTTGTATACATTGTGAATACAAAGCTCAAAGTTTTCTAGATTTAAAAACTCACGCCGTATTAAAACATGAAATAAAACATATAGATAAATTACAATTTCAATGTTATgattgtcaaaaaattatacCAAAGTATAGTTTCTATCTCAACCACATACGTGCACGACATCATCCAGCTCTAAGATTGCAATGTGATGTTTGCGATTTGAAATGCGAGAACTACGAACATTTGTCATTTCATCGTAGTACGAATTGTTCAGAAGCAAATCAATTTAGCTATCTATTATCCTGCACTCAATGTTTCAAAAGCTTTCAGACTACATATGGTTTACAAACTCATAATAAACAACAACATTCTACGTCGGAAATAAAAGTGAAATATCAATGCACACATTGTGGTAAGGTGTTTAAACAGAAGAGTTGTGTAAAAGTGCATGAACTTTCACACACAGaaaacaaaaaatattctTGTGGTATTTGTGATAGTGCGTTTGTAAACCAACAAAATTTAGATATACATCTTTATACGCATATCGAAGAAAAAACTTATCAGTGTTCGAAATGTGACAAAAGatttaaaacatttttaactCTCGATCGACACCAAAATGTTCATTCAAAACATAAACCGTTTAAATGCCAATTTTGCGATAAACATTTTCGTAATAAAAGTGAAAAGCTAACACATGAACGTGTTCATACCGGTGAATTGCCCTTTAAATGTCAACAATGTGAAAAACGTTTTCGTTTTCTTAGTGCTTTAAATGTTCATATTAGAAATCATAATGGGGAAAAACCTTTTGCCTGTGATTATTGCGATAAATCATTTATCGATACTTCAAATCGTAACAAACATATAAAGCGTAAACATCCTAACAGTAGATaa
- Protein Sequence
- MVGLCRLCASFRKMDGLIIINDQCNEICQKLRKCCQLNIQLQDTLPKSVCQECMESLNMSHKFFLKVQEAQETLQTLFPSKNTEEDRKNESWICLAKTLAAATGQNRKFALTAKEGELNYQDDDKTIKNELQTKNEKNEENIPVERVNTKQIQSTIHLDTKEVPIDINETQDNATVSLETEENVKYLDDVYNMLDICKDEMCNENAFDVLETIEVTIDESKEVKLENSSEILETMIKVNKDSVEQQQEETMYVDNQMELYSQETQFEEEHLTNEILDNEECVLEMIDQELRIEEHNPYIEVQSKWCKESDIEMQYIKVVETEQNQQEANEEIQPETDVEIIENENQAEMSDETLSSPSSQIKSWQSYPYLCIHCEYKAQSFLDLKTHAVLKHEIKHIDKLQFQCYDCQKIIPKYSFYLNHIRARHHPALRLQCDVCDLKCENYEHLSFHRSTNCSEANQFSYLLSCTQCFKSFQTTYGLQTHNKQQHSTSEIKVKYQCTHCGKVFKQKSCVKVHELSHTENKKYSCGICDSAFVNQQNLDIHLYTHIEEKTYQCSKCDKRFKTFLTLDRHQNVHSKHKPFKCQFCDKHFRNKSEKLTHERVHTGELPFKCQQCEKRFRFLSALNVHIRNHNGEKPFACDYCDKSFIDTSNRNKHIKRKHPNSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -