Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465297.1:32783187-32790787[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.8 4e+02 3.5 0.3 1 23 176 198 176 198 0.89

2 7 0.00021 0.022 16.9 1.1 1 23 204 226 204 226 0.98

3 7 3.3e-05 0.0035 19.4 0.4 1 23 232 254 232 254 0.98

4 7 0.00015 0.016 17.4 0.2 1 23 260 282 260 282 0.96

5 7 0.01 1.1 11.6 4.6 1 23 288 310 288 310 0.96

6 7 5.8e-06 0.00062 21.8 1.9 3 23 318 338 316 338 0.97

7 7 4.5e-06 0.00048 22.2 0.3 1 23 343 365 343 365 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.8	4e+02	3.5	0.3	1	23	176	198	176	198	0.89
2	7	0.00021	0.022	16.9	1.1	1	23	204	226	204	226	0.98
3	7	3.3e-05	0.0035	19.4	0.4	1	23	232	254	232	254	0.98
4	7	0.00015	0.016	17.4	0.2	1	23	260	282	260	282	0.96
5	7	0.01	1.1	11.6	4.6	1	23	288	310	288	310	0.96
6	7	5.8e-06	0.00062	21.8	1.9	3	23	318	338	316	338	0.97
7	7	4.5e-06	0.00048	22.2	0.3	1	23	343	365	343	365	0.98

Sequence Information

Coding Sequence: ATGGATCGTTTCGTGTACAAGAAAATCTTAGAAACAAAAATGCTCCCATATGCAGAATGGAATATGCCACTTCGATGGGTGTTTCAACAGGATAATGACCCGAAACACACATCGAAGTTGGTCAAGGAATGGTTTCAGACGAAAAGGATTCAAGTCCTTGATTGGCCGGCACAATCACCCGACTTGAATCCTATCGAAAATTTGTTTGCCATTAAACCTTTAAATGATGATATTTTATGTGATCTCATtgatatttataaaaactaccCAAGTCTATGGAACGTAAATCATTTAGCTTTTACTGTAAAAGATAAGCGTCATGAAACTATACAATCAATGTTGGAAGAAGTTGAAAAAAAGATGAATCTCGTTTTGGATATTTACAAATTggaaaaacatttaaattatatacataAATCATTTGCCATGGacaaaaaattgaaattggaAAACAAGCAAATTAACTTTCAGCCATCCTGTTCTTATTATAATAAATGCGATTTTCTTGAGATACATCAAGGGCCATTTAAATGTGCCGATTGTGCTAAAATAATTGGAACATATAATGACTATGTACTTCACAAATCTCAACACGATGGTTCAGTACCATTCAAGTGTCAGGAATGTGGCATGGGTTTTAAGAAAATTACTAATTATACAATTCACGCTAAGCGGCACTTACgtgtttttaaatttcactGTGAAATATGTGGCAAAGGCTATCCTTTTAATGCTGAACTCGATCTGCATATGCGATCGCACACTGGTGCACAACCATATTTGTGTTCTGTATGTGGTGAAGGATTTCGCACAGCCATTAGTTATGATAATCATATTCGCAGACATGAAGAAcgatttaaatatttttgtcaTATCTGTAAGAAGGGTTTTAATCATATGACACGTTTAAATGATCATGTTAAGGCCCATCTGAATGTACGAGATGTTATATGTACGGTGTGTGGTAAAGGTTTTACTAGTCGCAAATATTTGAATCATCATAAGCGTATACATGAAGGTAAAAATTATAGCTGTAATatttgtggaaaaagttttgCTCAAGATGCCGGTTTAAGAGCACATAAAAAATATCATGGTACACCAATTGGTATAAGTAGTATACAAAAAGaacaaaataaatataagaTATTGTAA
Protein Sequence: MDRFVYKKILETKMLPYAEWNMPLRWVFQQDNDPKHTSKLVKEWFQTKRIQVLDWPAQSPDLNPIENLFAIKPLNDDILCDLIDIYKNYPSLWNVNHLAFTVKDKRHETIQSMLEEVEKKMNLVLDIYKLEKHLNYIHKSFAMDKKLKLENKQINFQPSCSYYNKCDFLEIHQGPFKCADCAKIIGTYNDYVLHKSQHDGSVPFKCQECGMGFKKITNYTIHAKRHLRVFKFHCEICGKGYPFNAELDLHMRSHTGAQPYLCSVCGEGFRTAISYDNHIRRHEERFKYFCHICKKGFNHMTRLNDHVKAHLNVRDVICTVCGKGFTSRKYLNHHKRIHEGKNYSCNICGKSFAQDAGLRAHKKYHGTPIGISSIQKEQNKYKIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -