Basic Information

Insect: Leucophora obtusa
Gene Symbol: Bcl11b
Assembly: GCA_949987735.1
Location: OX465296.1:19261569-19262381[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1 1.1e+02 5.3 0.1 10 23 2 15 1 15 0.89

2 10 0.00011 0.011 17.8 0.7 1 23 21 43 21 43 0.98

3 10 7.3e-06 0.00077 21.5 1.8 1 23 51 73 51 73 0.98

4 10 0.074 7.9 8.9 6.0 1 23 78 100 78 100 0.98

5 10 3.6e-05 0.0038 19.3 1.6 2 23 103 124 103 124 0.98

6 10 0.00022 0.023 16.9 5.4 1 23 130 152 130 152 0.97

7 10 7.8 8.2e+02 2.5 0.3 11 23 163 177 161 177 0.82

8 10 0.0024 0.25 13.6 5.3 1 23 181 203 181 203 0.98

9 10 2.3e-05 0.0024 20.0 3.3 1 23 211 233 211 233 0.97

10 10 0.00016 0.017 17.2 0.6 1 23 239 261 239 261 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1	1.1e+02	5.3	0.1	10	23	2	15	1	15	0.89
2	10	0.00011	0.011	17.8	0.7	1	23	21	43	21	43	0.98
3	10	7.3e-06	0.00077	21.5	1.8	1	23	51	73	51	73	0.98
4	10	0.074	7.9	8.9	6.0	1	23	78	100	78	100	0.98
5	10	3.6e-05	0.0038	19.3	1.6	2	23	103	124	103	124	0.98
6	10	0.00022	0.023	16.9	5.4	1	23	130	152	130	152	0.97
7	10	7.8	8.2e+02	2.5	0.3	11	23	163	177	161	177	0.82
8	10	0.0024	0.25	13.6	5.3	1	23	181	203	181	203	0.98
9	10	2.3e-05	0.0024	20.0	3.3	1	23	211	233	211	233	0.97
10	10	0.00016	0.017	17.2	0.6	1	23	239	261	239	261	0.99

Sequence Information

Coding Sequence: ATGTTTATATCTGGTTCTCAGTTAAAAGAACACATTAACAAGCATACTGGCGAAAAACCTTATAAATGTAATGTTTGTGCCAAACTGTTTCCATCTCAAGGCTCTTTAACTCAGCACAAAAAATTGCATATGGGAGAATCGGCAAAAATTTACAACTGTCAACAGTGTGAGATGAAGTTTATACGTCCTGTTAATTTAAAGCACCACCTGAGGATTCATACTGGAGAAAAATTTGAATGTGATATATGTCACAATCGTTACTGTTATAAAAAGAGTTTGGATGAACACAAGCAGTCGCATTTGAGAGAATGCAAATATTGTAAGAAGAAACTTTCAAGTGATGAGAATTTAAGAATTCACCTTAGAACACACATTGGCGAAGGACCTTTTGAATGTGATATATGTCACAAACGTTATCGCACTAACAGCTATTTTAAATATCACAAAATCAGTCATTCCGAGGAAGCTGTAGGGACTAATAATTGTGAAAGTAAATCTGAATTAATAAGCCACATACATACCGCCAGACACGATTTGCCCCATAAATGTGATATGTGCACTAAACGTTTTCAAACTCTTGAAAAACTTAGTAATCACAAAAAAAGCCACATCGGACAAGCCAAACGGACTTTTGATTGTGAACATTGTGAGAGTAAATTTAAACGTAATTCTTATCTTAAAATCCACTTACGTATTCACACTGGCGAAAAACCCTATAAATGTCAGATATGTCAGAGACTTTTTGCAGCCACTGCAAATTTAGCTAGGCACAAAAAGACGCATAGGGGCGCtgaagcaaaaaaaaaatgttaa
Protein Sequence: MFISGSQLKEHINKHTGEKPYKCNVCAKLFPSQGSLTQHKKLHMGESAKIYNCQQCEMKFIRPVNLKHHLRIHTGEKFECDICHNRYCYKKSLDEHKQSHLRECKYCKKKLSSDENLRIHLRTHIGEGPFECDICHKRYRTNSYFKYHKISHSEEAVGTNNCESKSELISHIHTARHDLPHKCDMCTKRFQTLEKLSNHKKSHIGQAKRTFDCEHCESKFKRNSYLKIHLRIHTGEKPYKCQICQRLFAATANLARHKKTHRGAEAKKKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00893086;
90% Identity: iTF_00893086;
80% Identity: -