Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465299.1:51942633-51946088[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.7 1.8e+02 4.7 2.7 2 23 267 289 266 289 0.92

2 10 0.15 15 8.0 0.6 6 23 298 315 298 315 0.98

3 10 0.0018 0.19 14.0 3.0 1 23 321 344 321 344 0.98

4 10 0.00016 0.017 17.3 0.4 1 23 354 377 354 377 0.96

5 10 0.00057 0.06 15.6 4.6 2 23 386 408 386 408 0.97

6 10 0.00016 0.017 17.3 0.4 3 23 416 436 414 436 0.97

7 10 3e-05 0.0032 19.6 0.2 3 23 446 467 444 467 0.95

8 10 1.2e-05 0.0013 20.9 1.7 1 23 474 497 474 497 0.97

9 10 1.1e-06 0.00012 24.1 1.4 2 23 504 525 503 525 0.97

10 10 0.0004 0.043 16.0 2.3 1 23 531 554 531 554 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.7	1.8e+02	4.7	2.7	2	23	267	289	266	289	0.92
2	10	0.15	15	8.0	0.6	6	23	298	315	298	315	0.98
3	10	0.0018	0.19	14.0	3.0	1	23	321	344	321	344	0.98
4	10	0.00016	0.017	17.3	0.4	1	23	354	377	354	377	0.96
5	10	0.00057	0.06	15.6	4.6	2	23	386	408	386	408	0.97
6	10	0.00016	0.017	17.3	0.4	3	23	416	436	414	436	0.97
7	10	3e-05	0.0032	19.6	0.2	3	23	446	467	444	467	0.95
8	10	1.2e-05	0.0013	20.9	1.7	1	23	474	497	474	497	0.97
9	10	1.1e-06	0.00012	24.1	1.4	2	23	504	525	503	525	0.97
10	10	0.0004	0.043	16.0	2.3	1	23	531	554	531	554	0.95

Sequence Information

Coding Sequence: ATGGATGGCTGTTTATTATGTTTAGAGATAAATACGGAATTTGACGATTGTATCAAAGTTGATTCTTTACAATGGCTTGAATTAAATGTACACTCCATAATAGAAAAACATTTATGGTGCATGGAAATGTTAAAAGGTTACTCCAGTTTGTGCACAAGATGTTGGCAAGAATTGTATGATTTTCATAAATTCTATAAACGCATAGAAGCGACCCATACAAATATTGGTAAATTCATGAAAGTTGAAGATGAAACTCAAGTGTTAGTGGATGAAAAACATGATAATTTTGTTAAGGAACTAGATGAATTAATTGATACCAATCTGAAGAATGATCAAAACCTTGAACCAGAGGTTTTAATAATTAAAGAAGAAAATCCATTTGCTGATATGTTAATAGAAGATGTGATAGAGGATGAGAATGACGATAAACCATTAAGCCAAATGCGAAAACGTCTATGTACAGCTAAAAACAAACACGGTCAAAAAGAGTATAAAAATGATCCTTTGAAAAGACTAacaaaaaaatccaaaacatttaaaagtaaaactaaaaaaactgaaaagcaattaaaagAATCGGTCAGTGAACCTATTACCCTTATAAAATCAGCAACAAGTGAAAACGTCGATAAAGTATTTCCAATTAAAACTGAATTATTAGAAGAAACTAGCTCAAATGACAACAATGATGAAACAAATTCACATACTAATCAAGAAGAATCTAATAAAAATGacactaaaaaatttaaaacaagtCATCATAAAAATGATAAATTTATAGCAGAAAATATTCAATTGTATTGCCATCTGTGCCAAATACAATTTGATAACTTTACTCCTCTACTAAAACATTTCCATGTCGAACATAATCAACGTGGCTATGCCGTATGTTGTCAGAGAAAATTCATGCATCGTTCAGATTTAGTGGATCACATTTATGTCCATAGAAACCCAGAAcattttaaatgtaaattttgtgaaaaagCTTTAGCAGATCGTAAGTGTTTAAGAATACATATAAAAAAGTTACACGAAGGTATAAGATATACACCAAAAAATTTCGATTGTGAAATATGTGGTAAAGTTTTAGCCAACAAACATGGATTACAAATACACACTTATACAATGCATGAGGTGACAAAAGACGACAGAGAAACCTGTACAGAGTGCAATAGAACCTTTCGCAATAAATTATGTTTAAAAAGTCATGTAAAAACTGTACATTTAAAGAAATATGTTCAAATATGTGATCTTTGCGGTATTACTCTATCCGACAAGGAATTATTTAAACGCCACATGCTAAAACATGAAGGAAAACCACTGCCCACAATAGCATGTAATATTTGTGGACGCATTTATACGGAGAAAAAAAGTTTAAGACGTCATATAAATTTAGCACATCCAAAAGAAAAAGTTGAATTTAGCTGTAGTTTATGTACGAAAAAATTTGCCACTCAATATAATGTGCAAAAGCACATAAAGAGTGTACATGAATCAAGTTATGTGCAAAAATGTACCGTATGCGAGAAGACTTTTAGAAGACCAGATTCATTAAGGGATCATATGTCTAGACATAGTGGAACTCCTTTACATTCGTGTCCTTGGTGTCCTAAGACATTTTACTCAAACGGTCAAATGCATGCTCACCGCAAAGAGCTTCATCCTAAGGAGTGGGAGGAATATATACGTGAAAAGCATTCCGGAAATTTACCAGAAAAATATAAACTACCTGCTGCAATGCAAATTAATAATTTTGCATTAACACTTTAA
Protein Sequence: MDGCLLCLEINTEFDDCIKVDSLQWLELNVHSIIEKHLWCMEMLKGYSSLCTRCWQELYDFHKFYKRIEATHTNIGKFMKVEDETQVLVDEKHDNFVKELDELIDTNLKNDQNLEPEVLIIKEENPFADMLIEDVIEDENDDKPLSQMRKRLCTAKNKHGQKEYKNDPLKRLTKKSKTFKSKTKKTEKQLKESVSEPITLIKSATSENVDKVFPIKTELLEETSSNDNNDETNSHTNQEESNKNDTKKFKTSHHKNDKFIAENIQLYCHLCQIQFDNFTPLLKHFHVEHNQRGYAVCCQRKFMHRSDLVDHIYVHRNPEHFKCKFCEKALADRKCLRIHIKKLHEGIRYTPKNFDCEICGKVLANKHGLQIHTYTMHEVTKDDRETCTECNRTFRNKLCLKSHVKTVHLKKYVQICDLCGITLSDKELFKRHMLKHEGKPLPTIACNICGRIYTEKKSLRRHINLAHPKEKVEFSCSLCTKKFATQYNVQKHIKSVHESSYVQKCTVCEKTFRRPDSLRDHMSRHSGTPLHSCPWCPKTFYSNGQMHAHRKELHPKEWEEYIREKHSGNLPEKYKLPAAMQINNFALTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -