Lobt049046.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465299.1:25682376-25692584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.3 3.5e+02 3.7 1.5 2 20 534 552 533 554 0.92 2 16 0.0023 0.25 13.6 2.0 3 19 602 618 600 620 0.94 3 16 0.22 23 7.4 0.4 2 23 662 684 661 684 0.94 4 16 0.0068 0.72 12.2 0.6 3 23 692 712 690 712 0.96 5 16 4.9e-05 0.0051 18.9 0.3 1 23 719 742 719 742 0.95 6 16 0.00048 0.05 15.8 0.8 2 23 750 771 749 771 0.97 7 16 0.011 1.2 11.5 0.0 1 21 780 800 780 801 0.95 8 16 0.24 25 7.3 4.9 1 22 821 842 821 845 0.91 9 16 0.0022 0.23 13.7 3.0 1 23 850 872 850 872 0.95 10 16 0.98 1e+02 5.4 0.1 1 23 888 913 888 913 0.96 11 16 0.14 15 8.0 2.6 1 23 923 946 923 946 0.97 12 16 4.5e-05 0.0048 19.0 1.1 2 23 952 974 952 974 0.96 13 16 0.00016 0.017 17.3 0.7 2 23 978 1000 977 1000 0.96 14 16 1.3 1.4e+02 5.0 5.5 1 23 1006 1029 1006 1029 0.94 15 16 0.00011 0.011 17.8 0.4 1 23 1034 1056 1034 1056 0.98 16 16 1.1e-05 0.0011 21.0 1.4 1 23 1062 1084 1062 1084 0.99
Sequence Information
- Coding Sequence
- ATGGCAGTTAATGTTTCTACGATTCTCAGCGTTTGTTTATATTGCAAAACAAATTCTGAGGCTGATGCCGAAAAAGAATTTCATGAAATTTTCGATGAAGTGGGGTCAGAACTACAACTACCTACGTTGGTagagaaattttttcataaaaaattaataaataaaggtAAACAGTTGCTGTGTGAAGATTGCGTTAATCGTTTAATTGAGTTGTATGATGTGGAAGAACACGCCAAGGAAAAAAGGCGCGACGAAGGCGCTGGTGATATCGAAATCGGTATTAGTGAAGAGAAAAATAGTGGATATAAACAAATCGAAAGTAAGGAACCAAAAAATCCTAGTCCAAATATTTGTGAAGAAATTGATAATGCTGAAGATCAAGAAATTGAAATTGAAGAAGAAAATGATGAGCTAGAAATTGTGAAACCAAAAAGAATTGCAAATTTACTGTATAgtgataataaaaaaattggagCCCCTCATAACAATGACACTCCTCAATATAATGAAAGAAATACTAAACAAATTCATCAGCATATCGAGGATAACGTAATTGAGCCAACAAATACTATTGATGGTTTTCATTATGATAATGCAACACATATTTCTAACCATACCGAAGAAGTTTTTCCTAACGGCGACGATGTAGTAACTGAATTACTAAAAGATAATGAAGTTTCTTATGATGACTTAACTGTTGATAACGACACCGATAATGAATATAAAAAAGTTGAACCAACTAATGAGGGTAAAAATATTCATTCTAATAAAAGACAAATTTCCAACCATGCCGAAAAAGATCTTAAACCCTATGAATATAATGAGCTTAACGAAACAAATTGTATGGAGAATGGTCAGTATGATGAAGATTATAATGAAAGTCCCATTTCTAATCGAATTGAGCCACATTCAAAACACGGTAAATATCAAGAAATTGAGTTGGGAAATAATCGAGAAGTTCCTTATAATTTGTCATCAGAAGATGATCCAGATTCTGATGTTCAGCTAATTGAAATTCTTGATGAAATAATCTTGGAAGGCACTGAAAGTTCTAAAGAATTCGAAACTAATGAAAATCAAAATGACAACGAAATATCTGAAGGACAAATAACCGACACAGATAAGATATATTGTTCGGAACAAAATGAAATTACAGAAGAGCATGCATATGAAGATGAATATGATTCTTTATTGGAATGCATATCCGAAAAGTCGAATGATAATAATATGAATTTAGACGATATTGAAGAATTCAGGGAGGATGATAATAGCGAAGAAGGCTTCGCAGTAGAGGATAAAAAATCAACGGTTAAAAATAATGTCAATAAAGAAGCATCTAATTTTAACCAAGATAGTGATAATATAGTCGAAATTGATCATAGCAACGACTTAATTTTACAAGATTCGCAAACTAATGGGTATTTAATAGTTATGGAAGAAATGACTGAAAATACACTAGATGAAAACATGACAATGGAAGAAGAGTATTTAGTAGAAGAATTAATTAGTTGTGATAAATTTGATAGTGTGGACTTAAATGAATATTTCGATAAAAATGTTATGACAAAGTTTGACCAATTGGAATTGCAGTGGTCCTTAGAATGTAAAtTGTGTCTTCAAAAATATGATACTTTccaaaatttattaaaacattCTTGTATAAATGAATTATTTAAGGACGAAAAACCTGGTTGTTGTATTTTAAAAGAATGTGATGAAATTATGAATAATTTAAAATCTTTAGCCAGACATTTAATTCTGtatcattatgaaaaaattgAAAGTCTTTCAATATATAGTAACTGTACCGATTGTGACAAAAGATTTTCAAATTTGATTGATTTAAATAAACATTCTTGTTGTCGTACTATAAAAAGAAAAGCGGGGGCTAGAAATTTTTGTCAATCTTGTGATATGGATTTTCCTTCTTTAAAAAGATATATCTTCCACATGCAGTTTCATTATACGAAACATCGTCCTAAGGTCTGTTTGTTATGTGGAGCCTTATTTAGTAATTCTAATGATTTCTTCGATCATACACAATATAATCATGAACCGGATAATTCAATGGCTTGTATGACCTGCGATCgtttttttaaagataaatttGTTTATGAAAAACATATGGAAATACATGATGAATCACAATGCAATTTTGCTTGTACATATTGTCCAAAAAAGTATACAAAAAGGAGTGGTTTAGTTGCGCATATGGAaatttatcacaattttaaaacaaaaactttacGATGTACATATTGTGATAAAGATTTTGCAGCAATATCTTCATATCGTAGTCATATGAAGTCTCATGTACCTGAGTCAGATTTACCGGCATTTGTATGCTCAGAATGTGGTTTAATGTCGAGTAGTTCAGACATGATGAAGGATCACATGGAAATGGATGAAGAATCTTCTTGTAATACGGCTATTATTATTGAAGAATTACTCTCTGCTTGCTATACATGTGAAAACTGTTCAATGGATTTTCATACAATGCAACATTTGCAGAAACATCGCTTATCAAAAAATCATAGCGACAAATTATTTTATTGTCCTCTGTGTCGTAAAGCTTTTACAACCTTAAAACATATGCGTAATCATGCCACTAATCATAAAGATTATGAACAATGGGAAGATATGTTTCCGATATCAAGGCTTTATATGTGTAATATAGGAAACTGTGAAGAAGCCTATCCTCTATGGACTTCTTTATATTACCACAAGAAAAGGCCACACAAAAAGGATAAAGAAGTATTACAAGATTTCAAATGCCAATTTTGTCAAAAAAGTTGCTTGACCAAAATGTCATTAGCGGTTCATATAGCCAGAAGTCATAATAGCACAAATGCTAGTTGTCCTAATTGTGAACGagtatttaaaaataagaaattattACAAGATCatattaataaatttcataCTGCTGTAAAATGTTCTTTATGTGACAAAGATTTTAAAAATCGCCGTAATTTAGATGCGCATACAAATTCGGTACATGATAATGTAAAACGTTTCTTTTGTCGACACTGCGAAAAAGGTTACTTCTTTAAAAGTGAAATGGAACATCATGAGAAAAATGTACATCCAGATGTTTCGTATAAATGTGAAATCTGTAATTTTGTCACCACATACCCAAAATCTTTAGAAATTCATATGAACAATCATTACAATAAACTTAGTTTTAAATGCACAATATGTTCAAAAGCATTTGGGCGCAAACAACTATTAAGCGTGCACATGAAAAGGCATGAAGAATTTACCTGTAGCGATTATTGTGAACAAGGCTGCGATTCCTTGTTTCTTACTTATAGTCTCATGAAAACCCATATTCAAACTATACATGAGAATCATAAAGAAGACCGTAAGAAAGTGAATACAACTAAACGTAAAAGATCACCGAATAAATCTCTTGAAGTGGCGGAAACAAAAGATTATACAGAAGGTAAAAATAATACACCCAAATGTCGTAAAACAACTACGAGTATATTACTGAAAGATATCGATAGTAAAAACGATTCATTAGATGAACTACTGGAAGAACACTTTACAAGTGATAATGAATCAGTTGTACAATATGAATATGAAATCAATGACACTTGTGAGTAA
- Protein Sequence
- MAVNVSTILSVCLYCKTNSEADAEKEFHEIFDEVGSELQLPTLVEKFFHKKLINKGKQLLCEDCVNRLIELYDVEEHAKEKRRDEGAGDIEIGISEEKNSGYKQIESKEPKNPSPNICEEIDNAEDQEIEIEEENDELEIVKPKRIANLLYSDNKKIGAPHNNDTPQYNERNTKQIHQHIEDNVIEPTNTIDGFHYDNATHISNHTEEVFPNGDDVVTELLKDNEVSYDDLTVDNDTDNEYKKVEPTNEGKNIHSNKRQISNHAEKDLKPYEYNELNETNCMENGQYDEDYNESPISNRIEPHSKHGKYQEIELGNNREVPYNLSSEDDPDSDVQLIEILDEIILEGTESSKEFETNENQNDNEISEGQITDTDKIYCSEQNEITEEHAYEDEYDSLLECISEKSNDNNMNLDDIEEFREDDNSEEGFAVEDKKSTVKNNVNKEASNFNQDSDNIVEIDHSNDLILQDSQTNGYLIVMEEMTENTLDENMTMEEEYLVEELISCDKFDSVDLNEYFDKNVMTKFDQLELQWSLECKLCLQKYDTFQNLLKHSCINELFKDEKPGCCILKECDEIMNNLKSLARHLILYHYEKIESLSIYSNCTDCDKRFSNLIDLNKHSCCRTIKRKAGARNFCQSCDMDFPSLKRYIFHMQFHYTKHRPKVCLLCGALFSNSNDFFDHTQYNHEPDNSMACMTCDRFFKDKFVYEKHMEIHDESQCNFACTYCPKKYTKRSGLVAHMEIYHNFKTKTLRCTYCDKDFAAISSYRSHMKSHVPESDLPAFVCSECGLMSSSSDMMKDHMEMDEESSCNTAIIIEELLSACYTCENCSMDFHTMQHLQKHRLSKNHSDKLFYCPLCRKAFTTLKHMRNHATNHKDYEQWEDMFPISRLYMCNIGNCEEAYPLWTSLYYHKKRPHKKDKEVLQDFKCQFCQKSCLTKMSLAVHIARSHNSTNASCPNCERVFKNKKLLQDHINKFHTAVKCSLCDKDFKNRRNLDAHTNSVHDNVKRFFCRHCEKGYFFKSEMEHHEKNVHPDVSYKCEICNFVTTYPKSLEIHMNNHYNKLSFKCTICSKAFGRKQLLSVHMKRHEEFTCSDYCEQGCDSLFLTYSLMKTHIQTIHENHKEDRKKVNTTKRKRSPNKSLEVAETKDYTEGKNNTPKCRKTTTSILLKDIDSKNDSLDELLEEHFTSDNESVVQYEYEINDTCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -