Lobt037155.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465297.1:167662597-167677489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.3 2.4e+02 4.2 0.0 2 23 225 246 224 246 0.96 2 18 0.18 20 7.7 4.5 1 23 252 275 252 275 0.96 3 18 9.7 1e+03 2.2 0.7 3 13 296 306 295 317 0.79 4 18 0.021 2.2 10.6 0.4 2 21 372 391 371 392 0.94 5 18 0.17 18 7.8 1.1 2 23 440 460 439 460 0.96 6 18 0.057 6 9.3 1.5 1 23 469 491 469 491 0.94 7 18 0.0031 0.33 13.2 1.2 1 23 500 523 500 523 0.96 8 18 0.00068 0.072 15.3 0.2 3 23 530 550 529 550 0.97 9 18 2.4e-06 0.00025 23.0 1.4 2 23 556 577 555 577 0.97 10 18 0.005 0.53 12.6 2.4 1 23 583 605 583 605 0.97 11 18 0.0022 0.24 13.7 2.8 1 23 610 632 610 632 0.95 12 18 0.36 38 6.7 2.1 1 23 637 661 637 662 0.96 13 18 0.014 1.5 11.2 0.7 2 23 704 726 703 726 0.94 14 18 0.00045 0.047 15.9 2.2 1 23 728 750 728 750 0.98 15 18 2.1e-06 0.00022 23.2 0.3 1 23 755 777 755 777 0.99 16 18 0.001 0.11 14.8 2.2 1 23 783 805 783 805 0.98 17 18 0.0092 0.98 11.7 1.8 1 23 810 832 810 832 0.96 18 18 0.82 87 5.6 0.4 1 23 837 861 837 861 0.96
Sequence Information
- Coding Sequence
- ATGACGAAACGGTGTCGTTTATGTTTAGAAACAAATGCAGAAGACTACTACAGCTTACATGAAGAATATAAAGCTGGACCCACGTATGCAGATTTTATACAGCAGTTAGCTGGTGTGGAGATTGAATTCGACGATGGTTTGCCTCAAGAAATATGCGAGGACTGTTATTGTGAGATACAACGTATATTAGAATTTAGCTCAGGAGTTCGAAGGGCAGATGAAGAACTAAGAAACGAATTAAACAGCGTTAAACGTCAAAAAGATAGTACAGTTCTAGAGAATAAATATTATACCCAAGGAAATGAAATGTGTGCTATGGAAGATGTATTGGAACTGGATACAGATAATCAAGAAAGTTTTGTAGTGGAGGAAATTCACGAAGGAGAAGAAATTCATTTGGTTGAAGAAATTTTACGCATAGATAATGAAGTTATCACAGATGAAGTCATCATTGATGAGGTTATCACAGATGAAGATACAAAACCATGTCTTCAAAAAGAAGACTTATTAGTTGAATTGGCACATGTGGCAGCTACTCAAGATAATGTAGATGTTATTGACAAAAATGCCACAAACCCTGCAGAATATTCCAAAGATGAGAATGATGAGGATTATTTGATTGAATTTGATCCCAATGAAACTTTACGCCATAATTTTAAGCCACCTAAATGGAAATGTGGAGAATGTAAAGTTGTGCTGCGGGGCGATGTATCATATGAGGGTCACATGAATATGCACAAGCAATTAAGACCTCATAAATGTGGTCAATGTAATTGGGATTTTAGATGCCGTACAGCATTAAAGAAACATCAAGAAATTAGACATACATCGCGAACAAATCTAGAACTTAATGCtcatgaaaaaaattttcaaacaagTTCTTTCTGTGAAGAATGTAAAATATCATTTGTTACAGAGGTAAAATGTTATCTTCATGAAATAATGGTTCATAAGAAATACACAGATATTTCCACATGTCCATTTTGTTCGAATATTGTAGAAAATATAAAAGAGCATATTCAAAAATCTCATAATGATTACAATGTTATCGAAAATACCTTTAACAATGATAATACTTTAAACTCCGCTAATACCTCTATATCTACAGTATGGCAATGTAATATATGTTCTAAAATATATCATTCATTAGAGCTATTGAGTAATCATCAAAAATTATGTCAAAAAACAGACGAACAACAGACTCATGATATAAAAGTTGTTTACTTAGATGATATTCCGACTTCAACCACAGTAGAGTATTTGGAGAATGTACCAACAACAAATAATGCTAAGGATTCTTCTGAAAATGCATCTGTACAGTGTGAAGTTTgtaaaagaaaattattgaGAAGAAATTTAACTAAGCATATGGAATTGCATAATCGCAAAGATGAAACTAGGAAATATCTTTGTGCTCATTGTCCTCGTGAATTTCTGAATAAAAAATCTCTACGCCAACATGAAAGTATACATCAAGCAAAATCCTCAGATTTGGTATATATTTGTGGAGATTGTGATCGTCAATATACCTCAGAATGTTTACTTGAAACTCATCGAAAGCAAGCACACAAAGAACGTGACAATATCTGCTCCATATGCGGAAATGcattcaaattaaaaaatgaattaGTCAATCACATGAAATTgcatttggaaaaaaatatacaatGTCCGCATTGTGATAAAAAATATGCACGACAATTTGATTTAAATGTCCACCTTAGATCCCATACTGGAGAGCAGCCATTTGCTTGTCATTTGTGTGATAAACGTTTTGCGATTAAAGTAAGGCTGACCTATCATCTACAAAAACATTATGGCATCAAACATCAGTGTAAAGAATGCGGTGCAGAATTCAATTCAAAACAAACACTAAAGATCCACTCGTTCAAACATACCGGTATGCCATATCGTTGTGAGCTGTGTGATGATCACGGATTTGCTACACGTATTGCTTTTAAACAACACTTAAATCGTGCTCATCATGCCACTATATCAGATAAAGAACTTAATGAAATGTTTCAACAAAATACTGATATTTCATTTACCACTGATGAAGATTTAAATGAACACTTCAATTTAGAGCATCTCGCTACATCTCATCTGCTTGAATGCAAGCAATGTCATGTTAGCTTTGCCGatataaaacttttaaaagaaCACGGAAAGATTAATCATAAATACAAATGTAAATTATGTGGTAACACATTCCGTGGACATGCACAACTATCTGCCCACAAAAGACTACATAAAGAACGACCATTTAAATGCGATCAGTGTGATAAAGCATATCCACGAAAAGTTGAACTTGATATTCATATGCGAACCCATACGGGAGAACTTCCGTATGCTTGTCACTTGTGTGATAAACGTTTTGCAGTTAAAGTAAGACTAACCTATCATTTGCAAAAACATGAAGGTGTCATACATCCCTGTTCTTATTGCTCAGCTGTTTATGATAATCGCAATAAATTAAAAGCACATTTATTTAAACACACTGGTATGCCTTATAAATGTGAATTATGTCCTGGTTTAGGCTTTGACAGAAGAATAAGATTTGCTAACCATATGCAAAGAAAGCATAAGAAAACATTGACCGAAGAGGAATTGAGTAAAGTATTTGCTAAGAACACTGGAAAAACTATACATTTTAAAGATCCTGCTAGAgaaaaatga
- Protein Sequence
- MTKRCRLCLETNAEDYYSLHEEYKAGPTYADFIQQLAGVEIEFDDGLPQEICEDCYCEIQRILEFSSGVRRADEELRNELNSVKRQKDSTVLENKYYTQGNEMCAMEDVLELDTDNQESFVVEEIHEGEEIHLVEEILRIDNEVITDEVIIDEVITDEDTKPCLQKEDLLVELAHVAATQDNVDVIDKNATNPAEYSKDENDEDYLIEFDPNETLRHNFKPPKWKCGECKVVLRGDVSYEGHMNMHKQLRPHKCGQCNWDFRCRTALKKHQEIRHTSRTNLELNAHEKNFQTSSFCEECKISFVTEVKCYLHEIMVHKKYTDISTCPFCSNIVENIKEHIQKSHNDYNVIENTFNNDNTLNSANTSISTVWQCNICSKIYHSLELLSNHQKLCQKTDEQQTHDIKVVYLDDIPTSTTVEYLENVPTTNNAKDSSENASVQCEVCKRKLLRRNLTKHMELHNRKDETRKYLCAHCPREFLNKKSLRQHESIHQAKSSDLVYICGDCDRQYTSECLLETHRKQAHKERDNICSICGNAFKLKNELVNHMKLHLEKNIQCPHCDKKYARQFDLNVHLRSHTGEQPFACHLCDKRFAIKVRLTYHLQKHYGIKHQCKECGAEFNSKQTLKIHSFKHTGMPYRCELCDDHGFATRIAFKQHLNRAHHATISDKELNEMFQQNTDISFTTDEDLNEHFNLEHLATSHLLECKQCHVSFADIKLLKEHGKINHKYKCKLCGNTFRGHAQLSAHKRLHKERPFKCDQCDKAYPRKVELDIHMRTHTGELPYACHLCDKRFAVKVRLTYHLQKHEGVIHPCSYCSAVYDNRNKLKAHLFKHTGMPYKCELCPGLGFDRRIRFANHMQRKHKKTLTEEELSKVFAKNTGKTIHFKDPAREK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -