Lobt028598.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- ZFY
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:222060975-222071558[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00021 0.022 16.9 5.2 1 23 115 137 115 137 0.98 2 14 0.0026 0.27 13.5 0.1 2 23 259 281 258 281 0.93 3 14 0.011 1.2 11.5 5.5 1 23 287 309 287 309 0.96 4 14 4.6e-06 0.00048 22.1 1.3 2 23 441 462 440 462 0.97 5 14 0.00015 0.015 17.4 2.2 1 23 468 490 468 490 0.98 6 14 0.044 4.6 9.6 1.1 1 23 502 523 502 523 0.98 7 14 1.3e-05 0.0013 20.8 2.9 1 23 529 551 529 551 0.98 8 14 0.0064 0.67 12.3 0.4 2 23 568 590 567 590 0.94 9 14 0.0019 0.2 13.9 4.2 1 23 597 620 597 620 0.97 10 14 0.034 3.6 10.0 4.6 1 23 629 651 629 651 0.97 11 14 0.15 15 8.0 4.2 2 23 667 689 666 689 0.96 12 14 0.015 1.6 11.1 3.8 1 23 695 718 695 718 0.97 13 14 6.5e-05 0.0069 18.5 2.2 1 23 763 785 763 785 0.98 14 14 0.00025 0.027 16.7 1.2 3 23 791 811 790 811 0.97
Sequence Information
- Coding Sequence
- ATGACTACTAATGATTGTATTGCTATTAAGAATGATGATGAAATAGAATTTTTGGATGCTCATGAGTCCTTAATTTTAATTGAGGAATTCAATCAACAAATATCTGTTTGTCTAGAAAATGCAAAACTTTTAGAAGTTAATAATTACTGCTGTATTGAAGAAGAAAAGGAAGAAGAGTTTTTATATAATCCCTCTGTGCCAGATGCAGTTCAAGCCATCAGTTCTATAGAAATTTCTAAAACTGAGTATACATATGATGAATCAATAGCCAATACAGCTAAGCGATTGGAAAACAAATCAAATACCTTAGAGGATGGAGTCATAATCGATTTATTAGAAGATTATGTTTGTGAATTTTGTTTCAAATCTTTCGCTCAACGGCACCATTTAAAATCGCACTTAAGTGTACATACTGATGTATACAAGAAACCCctcaaaaaacaacagaaatcaaatgtttttaataaaaaatctaaGAATTCTAAACTAAAAAAACGAAAAGTTTCTGGTTCGAGTGTTAGTAAGAAAACACATGCGAGACTAACCCGCGCTGTTGTAAACAATCTGAAGCAGATAACTCAAAATCAGAAAAGTGCATTGAATGAAAATGTTGAAGAAAGTATTGCCTTAAGCGCTAAACTATGCAATAAAGGCAATCCCTTGAAAGAAAGAAATAATAAGATTACAAATTATTCCCAACAGAAGCAGCAAGGCCTTAATAATATCAATACAAAGAAAAAATACCCAAAATGCAGTATTATACAAATGGACGATAGATGTGCCATTTGTAATAAGATCTTTAGTATCCAGCAAGATCTTATTAAACATGCCCAGGAAATCCATTCGAAATTGAAAGCTTTTAAATGTCGAGAATGTAATGGATGTTTTTCCGATACATCATCATTATCGCGtcattttaaatttcataaagaaaTACCTGAACAAAGTGTTCGTAAAACTAGAAGTTCTAAAACGAAAGACGTACAAACTGAATCTCAACAACTTAATAAAAGTAATGAGATTGTCCTAAAAGAAAATGATAACGGCAATAATCTAAagaaaaaacagaaaaataatGAAGATTCTTTGGAAGTAATGAGCTTAGAAAAAATTCCCAGTATCAATGAAACTCAACGAATGCAAACAAACGTTTGCGATAAACCTTTGGAGATATCAgaaaataaaagcaaaaaatcGGCAGAAACTATTATTGGAGAACATGATAAAAATCTAACATCTACTGATAATACACATAGTGATTCTAAAAGAATTGACAACCCGAAACACAGAAAAAATGCAACTAGAGTTATTGGAAAACAAAAATGTAAAGTTTGTTCGAAAATCTTTCGTAACAACTCTCTTTTGCAACGTCACATAACCATACATACTGGGGAACGTCCCTACTCCTGCTCGTTTTGCAACATCACCTTTAGGCGCAAGGACTCTTGGAAAGATCATCAAGAAAAACACTTGAATCCGAAAccattaaaaattagaaaaaaatataaatgtgATTTTTGTTCTAAATCcttatttaaaatcaatttaaaagAGCACGTAATGATACATACTGGAGAACGCCCCTTCTCCTGCACTCTATGTAAAGAATCTTTTAAACGTAAGatagaattaaaaaaacaccAACAGAGTCACTTAAATCCGAAATCGAAAACCATGttagatttaacagttttggaCAAAAAATGTGGTGTTTGTAGTAAGGTCACTTATAACAAACAAGATCTTATTAAGCATGCCAAAGAGGTTCATAAGAGTGATTGTAGGCCTTTCAAATGTCAACATTGTGATTCGACGTTTTCCGGAATGCGCTCTCTAAGACGTCACTATAAAATTAATCATGTAGTTGAGTCAGAAAATCGTCTGCATACTTGTTCCACTTGCCAGAAATCCTTTCTAAATAGTTACAAACTTAAAATACATGAAAAAAACCACGTATACAACAGAAATCCAAAGATAAGTCATCTAGTCATAGAGAATAAATGTGCAATTTGTTATAAGAGTTTTAATTGTCACTCAGATCTTACTGAACATGTCAGACAGTCTCATCCAAATGGCAACGCTTTCAAATGTCGAGATTGTCATCGGGCTTTTACGAAAGTCAGTAGTGTAGTGTACCACTATAAAATGAGGCATAAAGATATGCTAAAGAAGTTGGATACAGAAGGCAAAACCAAATCCGAGTGTCATAAGAAATACCAAGTGAAAAATTCTAGTAGAAGACAACTGGCATCAAATATTGCTAAAAAGGGTCGAATGAAGACAAATtatgtttgtaaaatgtgtaaCAGATCCTTTGATCTCCACAACAATTTAAAACGTCACTTAATAATACACGCTGCACAGAATTTTTGTTCTTTATGTGAAAAATCCTTTATAAATGAGAAGAACTTAAAATTACATTTAGAGAAACATTTGAAAAATGCCAGGCAAAAAAACATCTAA
- Protein Sequence
- MTTNDCIAIKNDDEIEFLDAHESLILIEEFNQQISVCLENAKLLEVNNYCCIEEEKEEEFLYNPSVPDAVQAISSIEISKTEYTYDESIANTAKRLENKSNTLEDGVIIDLLEDYVCEFCFKSFAQRHHLKSHLSVHTDVYKKPLKKQQKSNVFNKKSKNSKLKKRKVSGSSVSKKTHARLTRAVVNNLKQITQNQKSALNENVEESIALSAKLCNKGNPLKERNNKITNYSQQKQQGLNNINTKKKYPKCSIIQMDDRCAICNKIFSIQQDLIKHAQEIHSKLKAFKCRECNGCFSDTSSLSRHFKFHKEIPEQSVRKTRSSKTKDVQTESQQLNKSNEIVLKENDNGNNLKKKQKNNEDSLEVMSLEKIPSINETQRMQTNVCDKPLEISENKSKKSAETIIGEHDKNLTSTDNTHSDSKRIDNPKHRKNATRVIGKQKCKVCSKIFRNNSLLQRHITIHTGERPYSCSFCNITFRRKDSWKDHQEKHLNPKPLKIRKKYKCDFCSKSLFKINLKEHVMIHTGERPFSCTLCKESFKRKIELKKHQQSHLNPKSKTMLDLTVLDKKCGVCSKVTYNKQDLIKHAKEVHKSDCRPFKCQHCDSTFSGMRSLRRHYKINHVVESENRLHTCSTCQKSFLNSYKLKIHEKNHVYNRNPKISHLVIENKCAICYKSFNCHSDLTEHVRQSHPNGNAFKCRDCHRAFTKVSSVVYHYKMRHKDMLKKLDTEGKTKSECHKKYQVKNSSRRQLASNIAKKGRMKTNYVCKMCNRSFDLHNNLKRHLIIHAAQNFCSLCEKSFINEKNLKLHLEKHLKNARQKNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -