Lobt036808.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465297.1:157302495-157347012[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.9 4.2e+02 3.5 3.6 2 23 132 154 131 154 0.95 2 19 0.068 7.2 9.0 1.9 1 23 160 182 160 182 0.97 3 19 0.0076 0.81 12.0 4.4 1 23 189 211 189 211 0.97 4 19 5.5e-05 0.0058 18.8 4.6 1 23 217 239 217 239 0.99 5 19 0.0055 0.58 12.5 1.1 2 23 375 397 374 397 0.94 6 19 0.0043 0.46 12.8 0.7 1 23 403 425 403 425 0.98 7 19 2.3e-05 0.0025 19.9 1.5 2 23 432 454 431 454 0.94 8 19 0.055 5.8 9.3 0.8 2 23 470 492 470 492 0.93 9 19 0.0074 0.78 12.1 4.0 1 23 498 520 498 520 0.98 10 19 0.00021 0.022 16.9 4.0 1 23 527 549 527 549 0.98 11 19 0.065 6.9 9.1 2.7 1 23 555 577 555 577 0.97 12 19 0.63 66 6.0 2.9 2 23 629 651 628 651 0.91 13 19 4.8e-05 0.005 18.9 2.8 1 23 657 679 657 679 0.99 14 19 9.6e-07 0.0001 24.3 2.9 1 23 686 708 686 708 0.97 15 19 0.00054 0.057 15.6 3.2 1 23 714 736 714 736 0.98 16 19 0.081 8.6 8.8 0.2 2 23 766 788 765 788 0.94 17 19 0.027 2.9 10.3 0.1 1 23 794 816 794 816 0.98 18 19 0.0008 0.084 15.1 3.3 1 23 819 841 819 841 0.97 19 19 4 4.3e+02 3.4 7.8 1 20 847 866 847 869 0.94
Sequence Information
- Coding Sequence
- ATGGACGATAATCTTTGTCTAAACAAAGAATTTATTATTAAGGATGAACACTCGTCAGATGAACATTCTTCCGAAGATGAAAATTATGACGCAAATGATCCGCTCGGTATTCTGCAAGACAAAAATCATCAATTGGATAAATATCAAGAAAATTCATCCAATCAAGTTGACGATAATTCCGATACAAATAAAACTCAACAAACGATAGAGGACTATGATAGTGACGAATATCTAGCTGGAATACAAATGAAACTCCGAATAGAGCAACAAAAAGCGACACTAAACTCTTCACAACAAACAATGCAGGATTTTGATAGTGATGAAGACATGAAAAGAGGAAGACCAACTGTTACAAAGCCACCAACTGTCACTAACCAACCAACTTTGTCTAAGGAATGTGCAATTTGTCAGAAGCATTTTGTCTGCCGGCAAGATTTTATAGACCATGCCCGAAAATACCATCCTAATGGAAAAGCTTTTAGATGTAGTGTTTGTTCTATGGTTTTTGTCAATATCCATTCAGTGTCACGTCATTCTAAAAATCATAAAGATAGAGTTAAAAAACATGTTTGTGAATATTGTTCGAAATCTTTTTTGCACCGTGACACTTACAAACGACACATAGAAATTCATAATAAAGGAAAAATTTACTCTTGCTCTGTATGTGGTAATTCCTATAAACATAAATATTCTTTGAGAAGTCATCAAAAAACACACTTGGAAATGGATAATAATAACGGCGAGACGGACTTAAATTTAGCTTGCAAAAATAACCAAATATCTGTTgaagaaaaaaaggaaaaagatATAAGTTTAACGAATATTCCCAATATAAAACAGGAAGAACATAATGCGACTGCTTTTGACTTACAACCGGGTTTGGAAATAAACAGTGTTGTAGATGAAACAAAAACTGAATATAGAGAGGAAGAACAGTTATTGCAAGTCCAAAAGGAGGGAgagatttataaaattgaatatATTGATGAACAGCATGAATTTGAGAATAATTCCAATACAAATGATACTCAAGACTTGCAGATGCCTGACACGAACATTACAAATGCGAGTCAACCAATTATGGACTCTAAACATAATAAACGCATGTCAACAGTGGACAGCAAATGTGCCGTGTGTCATCAGGAATTTACAACTCGTCAAGATCTTATTGATCATGTTCAACAATATCATCCAAATGCTAAAGCATTTAAATGTAGTATTTGCTCTATGCGTTTTTCCAATATACTTTCCATAGCACGTCATAGAAGagttcataaaaatttaccaaaaacTGTTTGCCCCTATTGCTCTAAATCCTTTATTCATAAAGATGATTATAAACGTCACATCACAAATGTACATTCGATTCAAATTGCCAACAACACAACCCAACCAGCAGTTGATAGAAAATGCGCTATTTGTCATGAGGAATTTAATTTACGTCAAGATCTCATCAAACATGCCCAGGAGTTTCATCCAAAACAAAAAGCTTTTAAATGCACAATTTGCTCgatggtttttaaaaatatacattataTATCACGTCATAGAAGAAATCATAAAACTTTGCCGAGGAAGTATCATTGTGAATTATGTTTCAAGTCCTATAGAGATCTAGATAATTTTAAACGGCACTTAAAAGTGCATAATATAGGAACTACCTACCACTGTTCATTGTGCAATATATACTTTCAATACAAAGTTTCTTTGAGAAATCATGAATTGATGCATTCGGCAATAGAATCGCTCGAAGATGACTTAGAAAAAGCATCCATTAAATATGATGCAGGAAAGAAATCGATTGAAGGTAAAAAAGATGAAAATAGTGAAGGCATCCAAAAGACACAAAATCTCGTTTTAAAAGGACAACGAGCTGTTGAAACAAAATGCGCCGTTTGTAAACAGGAATTCCATTATCGCCAAGATCTTATGAAACATGCGCACCTTGAACACCCCAATGAGAGAGCGTTTAAATGTAGTATTTGCCCCAgggtttttaaaaatatacattacTTATCAACACATCGAAGAGTTCATAAAAATTTGCCAAGAAAACATGTTTGTAATATATGCTCTAAGTCTTTTAGGGACCAAGATAATTTTACTCGACATTTAAAAGTGCATACGAGAACACGTCTCTACCCTTGTTCTTTGTGTAAAAAATCCTATAAACACGAAATCTCTTTGGAAAATCATAAAAAAACGCACTTGGAAAAGCCATTAATAGAAACAGAAGAGAAAGTGAAAAAAATGCGAAAACCCATTTCTGCCAGTTTTCAACGACCTGTTGAAATGAAATGTGCAGTATGCCAACAGGAATTTGATTACCGCTTTGAGCTTGTTAATCATGTCCAGTTAAATCATCCATATGCTAAAGCATATAAATGTGGCCTTTGTCCAATGGTTTTTGCTAATATAGTAGCAGTATCACATCATAGaaatatacataaaatttttgattGCAAACTTTGTTCCAAGTCCTTTACATGCAAAGATGATTTAAAACTACACATAAGGATACACACTAAAGAACGACCTTACTGCTGTTTTATATGTAAAACAACCTATAAACGAAGAGATTCCTGGTTAAAACATAAAACATGTCACTGCAAATCGAACAAAACAAATGAGCACAATAAAGATTTAATAACACAAAACGAGAATTTTGAAATTAACAAAAGTTTAGAATATTATCCAGATATTGATCggaaaattaatttaaatgcTGACAGCCAAAATGAATTGGAAGTCAACTCAGAACCAATAGAAGATGAACACATTTTGCAAATAAACAACGATAAGGGAATTAATAAAAACGACTATATTGAAGATGATCAATTGGAAGATAATTTCAATACAAATAAGGAGGATGATGATGActttttattagaaaaaatgACAAATCAGAAAAAAACGTCGGCAGAGGATGAAAACTATGCAGTACTGGAAGATAATTCCGAAAAGGATGAATATGATTACAGTAATGATGATAAAGAAGATGATGATTGTAATAATAAGGATCAAGATCATTATAATGTAGATAATGATGATGACTTTGTATTTAATAAGAAGACAAATCGCACAAAAGGACGAACAAATCTTTTACCAGCTGAGGAAGATATTTCAAATGATTCTCAACAAATAATACTGACAGATGAAGAGGATGATAAAGAAGATGAAGATTATGATGATAATAATGACGATgatgttgatgatgatgattaTAATGAAGATCATAATCAAGATGATGATGAAGatatttttcaagaaaaaacaaattttggAAAACTTCATCCACATCCCATGTTAGCAGGACAGGAAGAAGATAATACACATGATGCTCGAAATTTAAATGATAATGACTTAGGATATGAAAAATTGTCTAATGACAATATAAAACGTGACAGTAATATGACAGCTGTCGACACAAAGTGTGCAGTTTGTCAGCAGTCTCACACGGCATTTTCAGCTTGCCCAGCACCAGCATGGATTCCGGAAGCAGCACAGCACAACAACAGCTTTAACCGCCATTGCCACACAGATAACCAGCGGTCTAAATCAGAGCCGCCCTTGCGAAAGGACGGTTCTAGTGGCGCTTGA
- Protein Sequence
- MDDNLCLNKEFIIKDEHSSDEHSSEDENYDANDPLGILQDKNHQLDKYQENSSNQVDDNSDTNKTQQTIEDYDSDEYLAGIQMKLRIEQQKATLNSSQQTMQDFDSDEDMKRGRPTVTKPPTVTNQPTLSKECAICQKHFVCRQDFIDHARKYHPNGKAFRCSVCSMVFVNIHSVSRHSKNHKDRVKKHVCEYCSKSFLHRDTYKRHIEIHNKGKIYSCSVCGNSYKHKYSLRSHQKTHLEMDNNNGETDLNLACKNNQISVEEKKEKDISLTNIPNIKQEEHNATAFDLQPGLEINSVVDETKTEYREEEQLLQVQKEGEIYKIEYIDEQHEFENNSNTNDTQDLQMPDTNITNASQPIMDSKHNKRMSTVDSKCAVCHQEFTTRQDLIDHVQQYHPNAKAFKCSICSMRFSNILSIARHRRVHKNLPKTVCPYCSKSFIHKDDYKRHITNVHSIQIANNTTQPAVDRKCAICHEEFNLRQDLIKHAQEFHPKQKAFKCTICSMVFKNIHYISRHRRNHKTLPRKYHCELCFKSYRDLDNFKRHLKVHNIGTTYHCSLCNIYFQYKVSLRNHELMHSAIESLEDDLEKASIKYDAGKKSIEGKKDENSEGIQKTQNLVLKGQRAVETKCAVCKQEFHYRQDLMKHAHLEHPNERAFKCSICPRVFKNIHYLSTHRRVHKNLPRKHVCNICSKSFRDQDNFTRHLKVHTRTRLYPCSLCKKSYKHEISLENHKKTHLEKPLIETEEKVKKMRKPISASFQRPVEMKCAVCQQEFDYRFELVNHVQLNHPYAKAYKCGLCPMVFANIVAVSHHRNIHKIFDCKLCSKSFTCKDDLKLHIRIHTKERPYCCFICKTTYKRRDSWLKHKTCHCKSNKTNEHNKDLITQNENFEINKSLEYYPDIDRKINLNADSQNELEVNSEPIEDEHILQINNDKGINKNDYIEDDQLEDNFNTNKEDDDDFLLEKMTNQKKTSAEDENYAVLEDNSEKDEYDYSNDDKEDDDCNNKDQDHYNVDNDDDFVFNKKTNRTKGRTNLLPAEEDISNDSQQIILTDEEDDKEDEDYDDNNDDDVDDDDYNEDHNQDDDEDIFQEKTNFGKLHPHPMLAGQEEDNTHDARNLNDNDLGYEKLSNDNIKRDSNMTAVDTKCAVCQQSHTAFSACPAPAWIPEAAQHNNSFNRHCHTDNQRSKSEPPLRKDGSSGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -