Basic Information

Insect: Leucophora obtusa
Gene Symbol: -
Assembly: GCA_949987735.1
Location: OX465297.1:35856649-35871678[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00051 0.054 15.7 5.5 1 23 207 230 207 230 0.96

2 18 0.24 26 7.3 4.9 1 23 237 260 237 260 0.97

3 18 0.028 3 10.2 0.4 1 23 287 310 287 310 0.96

4 18 3 3.2e+02 3.8 0.0 1 23 413 436 413 436 0.86

5 18 3.6e-06 0.00038 22.5 1.4 1 23 545 567 545 567 0.98

6 18 0.00016 0.017 17.3 2.1 1 23 572 595 572 595 0.97

7 18 0.00026 0.028 16.6 2.8 1 23 602 625 602 625 0.98

8 18 0.0072 0.76 12.1 1.2 2 23 699 721 698 721 0.96

9 18 0.16 17 7.9 7.2 1 23 724 747 724 747 0.92

10 18 0.4 42 6.6 0.6 2 21 769 788 768 791 0.88

11 18 1.5e-05 0.0016 20.6 0.5 1 23 824 846 824 846 0.99

12 18 0.0049 0.52 12.6 0.7 2 23 853 874 852 874 0.91

13 18 0.18 19 7.7 3.1 1 23 880 903 880 903 0.90

14 18 0.00012 0.012 17.7 1.0 3 23 909 929 908 929 0.97

15 18 0.0028 0.3 13.4 1.4 2 23 943 965 942 965 0.94

16 18 0.00015 0.016 17.3 0.2 1 23 972 995 972 995 0.97

17 18 0.0058 0.62 12.4 5.4 1 23 1000 1022 1000 1022 0.98

18 18 0.00017 0.018 17.2 2.8 2 23 1029 1051 1028 1051 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00051	0.054	15.7	5.5	1	23	207	230	207	230	0.96
2	18	0.24	26	7.3	4.9	1	23	237	260	237	260	0.97
3	18	0.028	3	10.2	0.4	1	23	287	310	287	310	0.96
4	18	3	3.2e+02	3.8	0.0	1	23	413	436	413	436	0.86
5	18	3.6e-06	0.00038	22.5	1.4	1	23	545	567	545	567	0.98
6	18	0.00016	0.017	17.3	2.1	1	23	572	595	572	595	0.97
7	18	0.00026	0.028	16.6	2.8	1	23	602	625	602	625	0.98
8	18	0.0072	0.76	12.1	1.2	2	23	699	721	698	721	0.96
9	18	0.16	17	7.9	7.2	1	23	724	747	724	747	0.92
10	18	0.4	42	6.6	0.6	2	21	769	788	768	791	0.88
11	18	1.5e-05	0.0016	20.6	0.5	1	23	824	846	824	846	0.99
12	18	0.0049	0.52	12.6	0.7	2	23	853	874	852	874	0.91
13	18	0.18	19	7.7	3.1	1	23	880	903	880	903	0.90
14	18	0.00012	0.012	17.7	1.0	3	23	909	929	908	929	0.97
15	18	0.0028	0.3	13.4	1.4	2	23	943	965	942	965	0.94
16	18	0.00015	0.016	17.3	0.2	1	23	972	995	972	995	0.97
17	18	0.0058	0.62	12.4	5.4	1	23	1000	1022	1000	1022	0.98
18	18	0.00017	0.018	17.2	2.8	2	23	1029	1051	1028	1051	0.96

Sequence Information

Coding Sequence: ATGTGTCCATCAGCACTTGCATGCCGGTTATGCCTTTGTGTAGGGTCAGAACTCAAAGCGTTGGTCAACAAAAACGGCCAGAACAATGAAATTTTCGAAGTCGCTGCCAAATATTTTGATCCATTACTTTTGACCACGGTAATATGTGTAGACTGTTGGAAACATATTGATGAATTCCACAAATTTCAGCAATCGGTATTTAATGCTCAGGCGAGAATTGGTAAAGCTGAAATTGAACCACTCGTTAAATTAGAAACAGTGCTAATTACAGGGAATGATGATTTTGGAAAAACCGAACCGCTCTTTAAGTTGGAACCAGTAACAATACATCAAGataatAATGATGATAATTTGAAGGAGAATATGAATATACCAATAAACGATTCCATTGACTCAATCGATTACAACCCATTTTCTTCCGATGATGAAATTCCATTAACTAAATATACCGAAACATTAAAATCATGTATAAATTCCAAAGGAAAAACTTTGTTTGGTGGTGATTCTTCTGAACATGATGATGAATTGTCATTGAATGAATATTCTACGGCTACCCCATTATGTAGACAACCTAAAGAAGACACACATGAACAAAACACAACACATACCGAACAGACTTATCACTGTCACCATTGTCCAAGGAAATTTGCGGTAAAAAGAAACCTTCGTGCTCATGTCAAAAATATTCACACTAAAGAACTTGTCCAGTATCAGTGCCTATATTGTCCATCAAAATGTAAATTTAGACAAAGCATGCGACGTCATATTAAAAATTTGCATCCAAAAGAGTTAATTGCGCATTCTAATATTgaatcaaaaatttttaaaataattgaagCTAATCAAACTGAGCAGGGTTTTCAGTGTCCCTATTGTCCAGCCcaattgaaaattaaaaaaaatatacgtcGTCACGTAAAGAATGTGCATCCTAAGGAATATGTTGAATATTCTGTTAATCCACCAACAATAAGACAAGTGCCTTCAAATTTAATTTCTACAATATTAAATGATGAATTTTCGGAAACTGAAGCTCCTGTTTCAGATTCTcaaattataattaaaaaattaaataaaagtgTAGAAAAGTTATCATCTGGAGAAGCAAATATACACGTTAGTAATCAGAATGATTCCACCATATCAAATAATGATTCTTCTAAAGTCATTGATAACAAAAATAATCCAACATCTAAAGTAGAAACGATTGATGTTGATGATACTACTAAATACTCTTATCTGTGCCCCTATTGTCCAGCAAAAATTAGAACTAAAGAAAATATTCCTCTtcatattgaaaaaatacatgGCAAAGAATTTGTCGAGtataatattaataataattcaaaaaatattcaaatgGATTTACAACTAAATTCTTCCACCTCAAATGATGAATTTTCTGTAATTAACAAAGAAAGTAATGAAAATATTGTACTTGCTGACAAAAATAAAAGCGGATACAAAAATATGTCAGTAAAAGATTTAGTTAACTCAACAGATTTTAATCCACTTTCTTCCGAAGACGATGATGACATTCCTTTAACTAAATACTCCAAGACATCAAAATCGtatataaattctaaagaaGAAATGTTAGATGATAAAGAATTTACTCAAAGCGAACGTGAATTCAAATGTAATATTTGCGGTAAAAAATATAAGCGTGCGAGTTATTTACGTGAACATTCAGCTACTCACGATGAAAAGACTTATCAATGTCTCGACTGTCCAAAAACATTTGAATTAAAAAGATATCTTCATCGCCATATTCAAAATGTTCATTCTACAAAATTAGCACAGTATCAGTGTGTCCACTGTCCAACGGTATTTAAAATGAAGGAAAGCGTTCGGCGTCATATAAAAAGATTCCACCCTAAAGAATTTATGGAGTATTCTAATAACGAACCAAAACTATTCAAAATATATCAGCCTGATGGTACTGAACAGGTTTATCTGTGCCCGTATTGTCCAGCgaaagttaaatttttaaatcgtCATATTAATATAAAACATCCCAAAAAATACGCCGAGTATTGTGTTAATAAACCAAAAATAATTCGAGTACCAAATCTTCAAAATGATTGTAAAGTGAAATGTTCAATATGTAGTAAAGAATTTAAAACTGGATATACAGCACGTCAACACATGCAGTACAAACATACTGGGTATCAATGTCGCTATTGTCCGAAATTTTTCCAGGAAAGAAAAGATCTTCGTCATCATTTTGAACATTTCCATCCAACAGAATTTGAAGTATTTTCAGATTATGACGGATTTATAGCTAAGTGGGAAAAAGAGTTAGAATGTTATGTATGTAAAAACAAATACGCGaatttcagtttattaaataaacattttgaGGATGAACATCCCAAGGATAAATGTCATGTTCTATGTTGTGGACTTAAACTAAGTTATCGTTTGGCATTGGTCGAACACATACGACTTCATTTGGACCCAAACTTTTTCACATGTAAAATATGTGGCAAACGTGCTGTCAGTGGTCGTAATCTAAGAATTCATATGCGCACACACATCCAAGATCCTCAATTGCAATGTaaagtttgtaaaaaatattttatcaacAACAGCAAACTATTGCTTCATTCTGGCATACACATCACAGAAAAACATCATAAGTGTAAGGTATGTAGTAAAGGATTTTCCACCGAACTTCTACGAAAGAAGCATGAACTTAATTACCATAAAGGAAAACGTCTATGTGATCAGTGTGGTAAATCTTTTTATAATCTTAACTCACTCAAACAACATCAATTTGTTCATCTCGGTACCGAAACACTTTGTAAAGAAACACCTAAAGTTCCGTGTGAGATATGCGGAGCCCAATTTAAAACACATGACACACTTCATATTCACAAAAGAGCATTTCATGCTGATGATTCTAAGGCTTACGTATGCAGTGAGTGTGGTAGAATGTATTCCAGTGAAATAACTTTAAATCAGCACAAGAAAATTGTCCATACAACTGAGCGTTTTAAATGCACCATGTGTGATAAAGAATTTAAATATATCCATAGTTTTCGTCAACATAAAGTCACACATAGTTTAAGGAATCTTCTTCAATGTCCCCATTGTCCGTCGAAATTTACAcgaaatgaaaatttttatcgccatcttaaaatttttcatCCCACAGAATATGCCAAAGTACATCGGCGAAAAAAAACGAAAGCTGATTTTAGTTCAGTCAAGCAAACGATTGTTATTTAA
Protein Sequence: MCPSALACRLCLCVGSELKALVNKNGQNNEIFEVAAKYFDPLLLTTVICVDCWKHIDEFHKFQQSVFNAQARIGKAEIEPLVKLETVLITGNDDFGKTEPLFKLEPVTIHQDNNDDNLKENMNIPINDSIDSIDYNPFSSDDEIPLTKYTETLKSCINSKGKTLFGGDSSEHDDELSLNEYSTATPLCRQPKEDTHEQNTTHTEQTYHCHHCPRKFAVKRNLRAHVKNIHTKELVQYQCLYCPSKCKFRQSMRRHIKNLHPKELIAHSNIESKIFKIIEANQTEQGFQCPYCPAQLKIKKNIRRHVKNVHPKEYVEYSVNPPTIRQVPSNLISTILNDEFSETEAPVSDSQIIIKKLNKSVEKLSSGEANIHVSNQNDSTISNNDSSKVIDNKNNPTSKVETIDVDDTTKYSYLCPYCPAKIRTKENIPLHIEKIHGKEFVEYNINNNSKNIQMDLQLNSSTSNDEFSVINKESNENIVLADKNKSGYKNMSVKDLVNSTDFNPLSSEDDDDIPLTKYSKTSKSYINSKEEMLDDKEFTQSEREFKCNICGKKYKRASYLREHSATHDEKTYQCLDCPKTFELKRYLHRHIQNVHSTKLAQYQCVHCPTVFKMKESVRRHIKRFHPKEFMEYSNNEPKLFKIYQPDGTEQVYLCPYCPAKVKFLNRHINIKHPKKYAEYCVNKPKIIRVPNLQNDCKVKCSICSKEFKTGYTARQHMQYKHTGYQCRYCPKFFQERKDLRHHFEHFHPTEFEVFSDYDGFIAKWEKELECYVCKNKYANFSLLNKHFEDEHPKDKCHVLCCGLKLSYRLALVEHIRLHLDPNFFTCKICGKRAVSGRNLRIHMRTHIQDPQLQCKVCKKYFINNSKLLLHSGIHITEKHHKCKVCSKGFSTELLRKKHELNYHKGKRLCDQCGKSFYNLNSLKQHQFVHLGTETLCKETPKVPCEICGAQFKTHDTLHIHKRAFHADDSKAYVCSECGRMYSSEITLNQHKKIVHTTERFKCTMCDKEFKYIHSFRQHKVTHSLRNLLQCPHCPSKFTRNENFYRHLKIFHPTEYAKVHRRKKTKADFSSVKQTIVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -