Lobt019225.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- PRDM13
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:19767432-19771792[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.23 24 7.4 3.7 2 23 9 29 8 29 0.96 2 13 0.0078 0.82 12.0 12.3 1 23 37 59 37 59 0.96 3 13 0.00013 0.013 17.6 3.6 1 23 65 87 65 87 0.98 4 13 0.00024 0.026 16.7 3.1 1 23 93 115 93 115 0.98 5 13 1.7e-06 0.00018 23.5 0.9 3 23 122 142 121 142 0.97 6 13 7.6 8e+02 2.6 5.4 2 23 149 170 148 170 0.95 7 13 5.6e-05 0.0059 18.7 2.1 1 23 178 200 178 200 0.99 8 13 3.1e-05 0.0033 19.5 4.9 1 23 206 228 206 228 0.98 9 13 0.0011 0.12 14.7 3.6 1 22 236 257 236 260 0.89 10 13 0.0035 0.37 13.1 3.0 1 23 264 286 264 286 0.98 11 13 6.7e-07 7.1e-05 24.8 3.5 1 23 294 316 294 316 0.98 12 13 7.4e-07 7.8e-05 24.6 0.7 1 23 322 344 322 344 0.99 13 13 3.3e-06 0.00035 22.6 0.9 2 23 353 374 352 374 0.97
Sequence Information
- Coding Sequence
- ATGCCATCTAAAAATGCTGAAGTCGAATGTGAAATATGTCACAAACGTTTAAAAAGGGGAAGTCTACACAGTCACAGAAAGATACATATTGGAGAATCTGCAAAAATTCACCATTGTCAACATTGTGGAAAGAAATTTTTCTATCATTCTAATTTAAAAACCCACACAAAACTCCATACTGGTGTAAAACTTTTTGAATGCGAATACTGTGGTAAGAAGTTTGTATGTGGTTCGCACTTAAAAGTACACATTAACACACATACTGGCGAAAAACCTTATAAATGTGATGTTTGTCCCAAACATTTGTCATCTAAAAACTCTTTAACTCAGCACAAAAAATTGCATGTGGGAGAATCGGCAAACTGTCAGCAATGCGATAAAAAGTTTATACGTCCTTATGAACTAAAGCAACATCTGAGGATTCATACTGGAGAAGAATCACTTGAATGTGATATATGTCACAATCGTTACCAGTGTAAAAATAGTTTGAATCGTCACAAGCAGCTGCATTCGAGAGAATctgaaaataaatttcaatGCAAACATTGTGAAGAGAAACTTTCAAGTGATGAGAATTTAAGAATTCACCTTAGAACACACATTGGCGAAAGACCTTTTAAATGTGATATATGTCACAAAGGTTTTCGCACTAGCAGATATTTAAAATCTCACAAAATCAGACATACCGAGAATGCTTTAAGAAATCATAATTGTGATCATTGTGATAAGAAATTTTTACGTAAATATGAATTAATAAGGCACATATATTCCGCCAGACACAATTTGCCTCATAAATGTGATGTGTGCAGGAAACCTTTTCAAACTCTTGAAAAACTCAGTGATCACAAAAAGAGCCACATCGGACAAGGTCAACGTATTTTTGATTGTGAACATTGTGAGAAAAAATTTACACGTAGATCTGGTCTTAAAATTCACTTACGTACTCATACTGGCGAAAAACCTTATAAATGTGAGATATGTCAGAGGCGTTTTGCAGACAATGGGAACTTAGCTAATCACAAAAAGACGCATATGGGCGATGcagcaaaaactttaaaatgtGAATTTTGTGATAAAAGATTTATACGAAATCTATATCTTCAGATTCACATGAGAGTACATACTCAAGAAAACCCCAAACTACCATAA
- Protein Sequence
- MPSKNAEVECEICHKRLKRGSLHSHRKIHIGESAKIHHCQHCGKKFFYHSNLKTHTKLHTGVKLFECEYCGKKFVCGSHLKVHINTHTGEKPYKCDVCPKHLSSKNSLTQHKKLHVGESANCQQCDKKFIRPYELKQHLRIHTGEESLECDICHNRYQCKNSLNRHKQLHSRESENKFQCKHCEEKLSSDENLRIHLRTHIGERPFKCDICHKGFRTSRYLKSHKIRHTENALRNHNCDHCDKKFLRKYELIRHIYSARHNLPHKCDVCRKPFQTLEKLSDHKKSHIGQGQRIFDCEHCEKKFTRRSGLKIHLRTHTGEKPYKCEICQRRFADNGNLANHKKTHMGDAAKTLKCEFCDKRFIRNLYLQIHMRVHTQENPKLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -