Lobt034612.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465297.1:90186335-90190100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.8e-05 0.0041 19.2 1.1 1 23 94 116 94 116 0.98 2 18 0.089 9.4 8.6 1.0 1 23 122 145 122 145 0.93 3 18 0.00018 0.02 17.1 0.8 1 23 199 221 199 221 0.97 4 18 0.00042 0.044 16.0 2.9 1 23 227 250 227 250 0.97 5 18 0.00038 0.04 16.1 1.4 1 23 339 361 339 361 0.97 6 18 0.00037 0.039 16.1 2.7 1 23 367 390 367 390 0.97 7 18 0.00017 0.018 17.2 3.6 1 23 511 533 511 533 0.98 8 18 0.07 7.4 9.0 2.0 1 23 539 562 539 562 0.93 9 18 5.8e-06 0.00061 21.8 2.0 1 23 620 642 620 642 0.98 10 18 0.00012 0.012 17.7 0.7 2 23 649 671 648 671 0.97 11 18 2.9 3e+02 3.9 2.3 2 23 731 753 730 753 0.93 12 18 6.2e-06 0.00066 21.7 2.0 1 23 786 808 786 808 0.99 13 18 0.03 3.2 10.1 0.8 1 16 817 832 817 839 0.86 14 18 0.0015 0.15 14.3 2.6 1 23 845 867 845 867 0.93 15 18 0.079 8.3 8.8 2.7 3 23 876 896 874 896 0.95 16 18 2.2 2.4e+02 4.3 1.2 3 23 908 929 906 929 0.94 17 18 9.2e-05 0.0098 18.0 1.1 1 23 936 959 936 959 0.98 18 18 0.0091 0.96 11.8 0.2 1 23 987 1010 987 1010 0.97
Sequence Information
- Coding Sequence
- ATGGATGCTAACagaaacgatgcggttatcgATGATGATGATACTCTAAATATGGATATTACCAGAAAAGAAGATTTAAAAGACTATAACCCATTTGGTTCTGATGATGAAATTGTGTCACCTGAGTACTCTAACAAGAAAATACGCGAATTTGAAGAGCAAAAGattaaagaaacaaaaaatattattaaaaaacttaatacATCTTGCCAAAATTCTCAGGAAGAAGGCAATAATTTTGATAATAATAATGATGATTCTATTCATGATAAACATAGATTTATATGTTCCATATGTAACAAAGATTATAAACATGCTGTAGGATTACGTAGACATATATCCACTCATACTATACGGGAGACTTATCAGTGTCCGTATTGCACTACAAAATTTCAGGGAAAAGATAGTATTCCTCGTCATGTTCGACAGTTTCATCCCAATGATATTCCGAATTTCAATAACAGAgaattaaaaagtttaaattcATTTGTGTTAAAACATGACAATTCAAACGAGGAAAACAATGCTGTATTTGAAGAAAAAACAGTTGAACCTGATGACAATGATGGTGGAACTACTACAAGCAAACTTAAATATGAATGTTccaaatgcaataaaaaatatagcAAAGCCACCGACTTACGTTCTCATGAAGCTGTACATACAAAAGATGATATATATCATTGTCCCCACTGTTCGGCAAAGTATACGTTGCCCCGAAACCTTCGTCGTCATATTAAAATATTGCATCCGGAGAACTATATCAAGCATAAGAATAAGGAAGAAGGAATTCCGAACTTTAATAACAGGGAACTAAGAAGTTTAAATTCATCTGTGTTAAAAGATGGCAATTCAAACGAAGCAAATACTGAAAACCAATTTGTGTTCGAGACTTCTGAAACTAATTTTGAACATTTAAATTTTACTGAGGAAAATTCCTTTAATGCTGcatttcaacaaaaaaaagttgaGCCCGATGGCAATGATGGTGAAACTACTAAAAGCAAACTTAAATATGAATGTTCAgattgcaataaaaaatataccAAAGCCTGCGACTTACGTTCTCATGCAGCTGTACATACTAAAGAGGATATTTATCATTGTCCCCACTGTTCAGCAAAGTACTCGTTGCCCCGGAACCTTCGTCGTCATATTAAAATATTGCATCCTGAGGAATATATCCCGCGtaacaaaatgaaaaaagcTAGTTCTAGACCAGTAAAGCGCGTTCATTCTAATGAAGATGTTGActtaaaaaataagaaactaaaaagtttaaaattggATTCAGATATAAATTCATCCGTGGtaaaaaatgaaatttcttaTGAAGAAAACGCTTACATTCAATTTATTGAAGAGGCATCTGAAATAATTATTGAACAATTAAATGATAATACTATTGAAAATTCAGTTAGTGCTGCATCTGAAAAAGAAACTATTGATCATATTTATCATGCTGCAATTGAAGATGAAACTACTGTACCTGTTCATAAAACTGTTAAAACATCTCAAAGTAAACGTAAATACAAATGTACCAAATGTGATAAAAGTTATAATCATTCCCAAGCATTAAGTAGGCATAACGCCACTCATACTGTACGAGATACTTATAAGTGTCCATACTGCCCAACCAAATTCCAAGTAAAAGATAGTATTCCACGTCATGTGAGACATTTTCATTTCAGTGAATTTCCGACTTTTAACATCAGGGATCTTAAAAGTATAAATTCATCAGTGCTAAAAGGTAAAATATCGACCGAAAAAAATTCTGAAGATCAAACGGATGATGAGACTTTTGAAGAAGAAACTATTGAGTTTCATAACGACGATACTGCTGAAAGTAAACGTAAATATAAATGTACAAAATGTGATAAAGAATATACGTCTCGCAGCGACTTTCGGGATCATATGGCTTCACATAAAAATGAGGCTATTATTCAGTGTCCCTATTGTCTGACAAAATTTACACTACCTCGCACCCTTCGTCGCCATATTAAAACATTACATCCCGAGAAATATGTCGAGCCTAACAGTGATGTTCCAGTGGATTTAAACTTATTGGGGCGACATTTAACAAATTCGGATCCCGCACTAACAAATGTAGGAAGCGAAGATACTATAACTGAAGATTTGCCCAATTATAATGATTATGATGCCTTTATAACTAAATGGAAGCCTGTACTTGAATGTGATATATGTAAAACTGCGTTTGAGTGCTACGACTTGCTACATCAACATTTTAAGGTTGATCATCCACGTGATAAATGTCATATAGTGTGTTGTgaacaaaaaattgtatttcgTATCGGATTAGTGGATCACATACGACTACATCTGGATCCAAATTCTTTCAAGTGTAAAATTTGTGGGAAATGCTCAGATAATAGTAATTTACTTTTAGCTCATATGCGATCACATAGTTATGAAAAACATGAAAAACAATTTCAATGTGAAATTTGTCAAAAAAACTTTCGAAGCAAAACTCGGTTATTATTTCACTCTGGTATTCACAGCTTagaaaaaaactatttttgtaaGGTTTGTAATAAGGGattttccactacatttctaCTTAAAAAACATGAATACCTTCATAAGGAATACGAGTTTAAACATCTTTGTGATCAATGTGGTGAATCTTGCTTTAGTGTTAACGATCTTAAAGAGCATCTCCTTAAGCATGATGGCATTGAAATAACTACATCTAAGTGGTTTTGTAAACTATGTGGCGATCGATTTAGAACACGTTTAATTCTCAGAAACCATAAACTTACCTATCATTTTGTAAATAAGACTTCTTACGTTTGCAGTGAATGTGGTGGAAAATTTTCAAGTAAAAGATCCATAAAAAGGCATAAAAGAACTGCTCATGGAAATGGACGTGAACGAAAATTTAAATGTAACACATCATTACGTTTACATGGGGCTACAGAGACTAAAGATGCAACTCATTATCAATGTCCTCATTGTCCTCTGATATTGAAACAGCAGAAGAATGTTCCTCGCCATATTCAAATTGCTCATCCTACTGAATTTTCCAACGTAAATTACGAAAAATGGAATTAA
- Protein Sequence
- MDANRNDAVIDDDDTLNMDITRKEDLKDYNPFGSDDEIVSPEYSNKKIREFEEQKIKETKNIIKKLNTSCQNSQEEGNNFDNNNDDSIHDKHRFICSICNKDYKHAVGLRRHISTHTIRETYQCPYCTTKFQGKDSIPRHVRQFHPNDIPNFNNRELKSLNSFVLKHDNSNEENNAVFEEKTVEPDDNDGGTTTSKLKYECSKCNKKYSKATDLRSHEAVHTKDDIYHCPHCSAKYTLPRNLRRHIKILHPENYIKHKNKEEGIPNFNNRELRSLNSSVLKDGNSNEANTENQFVFETSETNFEHLNFTEENSFNAAFQQKKVEPDGNDGETTKSKLKYECSDCNKKYTKACDLRSHAAVHTKEDIYHCPHCSAKYSLPRNLRRHIKILHPEEYIPRNKMKKASSRPVKRVHSNEDVDLKNKKLKSLKLDSDINSSVVKNEISYEENAYIQFIEEASEIIIEQLNDNTIENSVSAASEKETIDHIYHAAIEDETTVPVHKTVKTSQSKRKYKCTKCDKSYNHSQALSRHNATHTVRDTYKCPYCPTKFQVKDSIPRHVRHFHFSEFPTFNIRDLKSINSSVLKGKISTEKNSEDQTDDETFEEETIEFHNDDTAESKRKYKCTKCDKEYTSRSDFRDHMASHKNEAIIQCPYCLTKFTLPRTLRRHIKTLHPEKYVEPNSDVPVDLNLLGRHLTNSDPALTNVGSEDTITEDLPNYNDYDAFITKWKPVLECDICKTAFECYDLLHQHFKVDHPRDKCHIVCCEQKIVFRIGLVDHIRLHLDPNSFKCKICGKCSDNSNLLLAHMRSHSYEKHEKQFQCEICQKNFRSKTRLLFHSGIHSLEKNYFCKVCNKGFSTTFLLKKHEYLHKEYEFKHLCDQCGESCFSVNDLKEHLLKHDGIEITTSKWFCKLCGDRFRTRLILRNHKLTYHFVNKTSYVCSECGGKFSSKRSIKRHKRTAHGNGRERKFKCNTSLRLHGATETKDATHYQCPHCPLILKQQKNVPRHIQIAHPTEFSNVNYEKWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -